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2020-03-11add new package: lmbench (#15457)darmac1-0/+30
* add new package: lmbench * refine LDFLAGS append call
2020-03-11revbayes: Update URLs and hashes for old archives (#15451)Nick Booher1-4/+10
* revbayes: Update URLs and hashes for old archives * Switch to url_for_version * Fix whitespace
2020-03-11Update package.py for HDF5 1.12.0 release (#15430)Les Kurz1-0/+2
* Update package.py * Update package.py * add upper bounds to production config_option * fix config_options * Fix mistaken changes.
2020-03-11add new package: php (#15435)darmac1-0/+41
2020-03-11cpio: icc -no-gcc (#15446)Daryl W. Grunau1-0/+5
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-11binutils: Add missing texinfo dependency (#15444)Michael Kuhn1-0/+4
2020-03-11add new package: keyutils (#15433)darmac1-0/+27
2020-03-11add hatchet python package (#15428)Stephanie Brink1-0/+27
2020-03-11libfabric@1.9.1: Add fabtests (#15440)Dr. Christian Tacke1-0/+4
The test utils for the new version 1.9.1 are missing. Add them.
2020-03-11Package for the resultsFile Python module (#15088)Anthony Scemama1-0/+22
* Added resultsFile package * Added comments * Fixed PEP8 * Added Python3 package * Removed py-setuptools
2020-03-11Horovod (#15380)rvinaybharadwaj2-0/+88
2020-03-11kealib: moved to github, added v1.4.12 (#15436)Neil Flood1-3/+4
2020-03-10Add valgrind variant to petsc (#15427)Hector1-1/+4
* Add PETSc valgrind dependency * Remove +debug on valgrind dependency * enh variant description
2020-03-10Fix OpenBLAS 0.2 build, 0.38+ Intel builds, and variant name (#15419)Seth R. Johnson2-19/+44
* Remove ARCH argument in OpenBLAS < 0.3.0 * Fix Intel OpenBLAS that uses lapack 0.3.9 * Improve variant name consistency see https://github.com/spack/spack/issues/15239
2020-03-10gcc: backporting fix for glibc 2.31 (#15403)Mathias Anselmann3-0/+114
* backporting fix for building gcc >= 8.1.0 and gcc <= 9.2.0 with binutils 2.31 * removed trailing whitespace
2020-03-10fix static mumps build error - Added a space at the end of ar vr for the ↵Nisarg Patel1-1/+1
static build to run successfully (#15407)
2020-03-10libxpresent: Add some dependencies. (#15417)Toyohisa Kameyama1-4/+9
* libxpresent: Add some dependencies. * Change *proto dependency type from build to link.
2020-03-10r: Lower optimization level when using Fujitsu compiler@4.1.0. (#15418)Tomoki, Karatsu2-0/+73
2020-03-10cryptsetup: Add pkgconfig dependency (#15422)Dr. Christian Tacke1-0/+1
2020-03-10SCR: build with components (#14931)Elsa Gonsiorowski, PhD9-13/+92
* scr: add develop, legacy branches; version 2.0.0 squash! scr: add develop and legacy versions * filo: package for SCR component * spath: package for SCR component * axl: update for versions 0.3 and 0.2 * scr: build with components * spath: structure of +mpi if/else * :ok_hand: capitalization of ecp-veloc * scr: branches are always greater than any version
2020-03-10contrib-spiral: submit SPIRAL package recipe and HCOL package recipe … ↵broderickpt2-0/+90
(#15188) * contrib-spiral: submit SPIRAL package recipe and HCOL package recipe (extension package for SPIRAL) to spack * contrib-spiral: fix flake8 complaints for spiral & hcol * contrib-spiral: Revisions to package recipes to address comments * contrib-spiral: remove unecessary 'test' function * contrib-spiral: update hcol package to install in <prefix>/namespaces/packages/hcol * contrib-spiral: don't import os to hcol * contrib-spiral: tweak hcol package recipe
2020-03-10Parallel-netcdf: update package. (#15359)Sergey Kosukhin2-26/+127
* Parallel-netcdf: update package. * Add a temporary patch for version 'develop'. * Rename version 'develop' to 'master'. * Drop the patch for 'master'.
2020-03-10libfabric: added v1.9.1 (#15405)Seth R. Johnson1-2/+2
2020-03-10gromacs: remove simd variants (#13636)Christoph Junghans1-14/+34
2020-03-10likwid: added v5.0.1 (#15421)TZ1-0/+2
includes fixes for likwid-mpirun, better support for ARM and POWER, other bugfixes. For full support of ARM and POWER, #14183 has to be merged, too. Added TomTheBear as maintainer. He is the current main developer of LIKWID.
2020-03-10bazel: add missing dependency on zip (#15402)Melven Roehrig-Zoellner1-0/+1
2020-03-10update binutils to 2.34 (#15401)Mathias Anselmann1-0/+1
2020-03-10eagle: new package at v1.1.2 (#15409)Justin S1-0/+46
2020-03-10openmpi: add version 4.0.3 (#15414)Howard Pritchard1-2/+3
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-03-09added cmake_args (#15411)ktsai71-1/+2
2020-03-09Gromacs: new version 2020.1 (#15399)TZ1-0/+1
2020-03-09exiv2: add zlib and expat dependency. (#15396)Toyohisa Kameyama1-0/+3
2020-03-09fast-global-file-status: add openssl dependency. (#15398)Toyohisa Kameyama1-0/+1
2020-03-09eigen variants have been removed (#15392)Stephen McDowell2-6/+2
* eigen variants have been removed ref: https://github.com/spack/spack/pull/15357 * opencv ^eigen is ('build', 'run') dependency
2020-03-07gnupg: add 2.2.19, add missing pinentry dep (#15390)Adam J. Stewart1-12/+23
2020-03-07libgcrypt: fix macOS tests (#15389)Adam J. Stewart1-7/+18
2020-03-07libgpg-error: add 1.37 (#15388)Adam J. Stewart1-6/+14
2020-03-07pinentry: add new package (#15387)Adam J. Stewart1-0/+47
2020-03-07new package: GunRock (#15383)Sinan1-0/+31
* new package: GunRock * Update var/spack/repos/builtin/packages/gunrock/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * improve Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-07Only use stable versions for public mirror (#15100)Peter Scheibel1-0/+17
* add --skip-unstable-versions option to 'spack mirror create' which skips sources/resource for packages if their version is not stable (i.e. if they are the head of a git branch rather than a fixed commit) * '--skip-unstable-versions' should skip all VCS sources/resources, not just those which are not cachable
2020-03-06sirius: add versions 6.4.4, 6.5.0 (#15374)Simon Pintarelli1-1/+3
- new versions 6.4.4, 6.5.0
2020-03-06New package: bat (#15345)George Hartzell1-0/+29
* New package: bat Add package for bat: A cat(1) clone with wings. * Update copyright date * Embiggen comment re build env settings Provide a bit more explanatory text about why setup_build_environment needs to set LLVM_CONFIG_PATH and LIBCLANG_PATH. Co-authored-by: George Hartzell <ghartzell@audentestx.com>
2020-03-06flatbuffers: Allow building shared libraries (#15375)Dr. Christian Tacke1-0/+13
Added a shared variant, that switches between shared and static library building, like with most cmake packages.
2020-03-06Add extra version of py-widgetsnbextension (#15372)iarspider1-0/+1
2020-03-06New package: gengetopt, tool for C command line parsers. (#15367)Robert Blake1-0/+36
* New package: gengetopt, tool for C command line parsers. * Adding url for `spack version` and `spack checksum`
2020-03-06eigen: updated url to point to gitlab (#15357)Massimiliano Culpo2-60/+22
* eigen: updated url to point to gitlab fixes #13890 Eigen migrated from bitbucket to gitlab * eigen: simplified package (no dependencies other than stdlib) * Added TODO list for future improvements
2020-03-06libunwind: remove version 2018.10.12, add stable branch (#15316)Mark W. Krentel2-7/+20
* libunwind: remove version 2018.10.12, add stable branch Finish cleaning up the libunwind version numbers. The 2018.10.12 snapshot number didn't fit well with spack's ordering (my bad), and 1.4-rc1 is a near identical replacement. Add a version for the 1.4-stable branch. Add a variant for zlib compressed symbol tables (develop branch only). Adjust packages caliper and hpctoolkit to adapt to the changes. Add myself as maintainer. * Flake * Settle on renaming 'develop' to 'master' (to match the branch name) and name the 'v1.4-stable' branch as '1.4-head'. 'stable' or '1.4-stable' is a better name, but '1.4-head' (an infinity version) sorts better.
2020-03-06Cscope: fix linking and update to v15.9 (#15358)Mathias Anselmann1-2/+10
* explicitly link against libtinfo * Update to v15.9 * fixed indentation * fixed url definition * added url vor current version again * fixed indentation * moving url_version to the bottom
2020-03-06munge: new version, local state path, misc (#15307)Dr. Christian Tacke1-1/+15
* Add version 0.5.14 * Add variant to allow setting the localstatedir: See below * Add bzip2 dependency * Add myself to maintainers (I just think, I can care for this package) About localstatedir: munge has a server and a client. They communicate via unix domain sockets. This socket is in PREFIX/var. This package provides the client, the server, and development part (headers, libraries). Let's assume one has the server part installed as a system package. This generally is a good idea, so that the server gets started during boot. This means, that the socket is in the system's /var. If one now wants to use the client part (library!) via spack, one has a problem: spack's munge looks in SPACK-PACKAGE-PREFIX/var for the socket. There needs to be a way to let the spack installed package use the system's socket. So add a variant to override the path during build: localstatedir=/var.
2020-03-06Update pycairo to 1.18.1 and fix dependencies (#15352)iarspider1-3/+5
* Update pycairo to 1.18.1 and fix dependencies * Typo
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