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2021-02-07aspcud: update version to fix build error (#21521)darmac1-1/+2
2021-02-07r-rmariadb: add mariadb library path (#21406)darmac2-0/+22
2021-02-06trilinos: @develop requires cxxstd>=14 (#21519)eugeneswalker1-0/+1
2021-02-05Add package: py-fava (#21275)Jean-Paul Pelteret1-0/+44
* Add package: py-beancount-fava * Rename package; fixes * Fixes * Cleanup; simplify regex used to ignore files
2021-02-05mxnet: convert to CMakePackage (#21385)Adam J. Stewart8-243/+155
* mxnet: convert to CMakePackage * Package isn't installed yet, can't find libs * Fix bug with GCC 8+ and CUDA 10 on PowerPC * Add space * Add patch to fix cmake cuda flags * Space no longer needed * Add patch to fix OpenBLAS linking * Add missing CMake flag * Fix env set, default to Distribution * Add new version, patch
2021-02-05py-python-benedict: new package (#21501)Bryan Herman1-0/+31
* added py-python-benedict recipe * Update var/spack/repos/builtin/packages/py-python-benedict/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-05gromacs: added v2021 (#21473)Evan Bollig1-2/+9
Fixed broken gromacs builds. gmxapi requires mpicxx to link properly Gromacs requires mpicc override on CMAKE_C_COMPILER, not MPI_C_COMPILER
2021-02-04New versions of libfabric (1.11.1, 1.11.2) (#21496)Evan Bollig1-0/+2
2021-02-04libjwt: Added openssl to resolve broken CICD pipeline (#21443)Evan Bollig1-0/+2
2021-02-04Disabled Non-Existant miniamr~mpi Variant (#21495)Robert Pavel1-10/+4
Identified build error for miniamr~mpi. Upon further investigation, the MPI dependencies are hard coded in that tag
2021-02-04lammps: Add support for a number of new LAMMPS add-on packages (#21494)Tom Payerle1-7/+44
mliap user-adios user-awpmd user-bocs user-cgsdk user-colvars user-diffraction user-dpd user-drude user-eff user-fep user-manifold user-mesodpd user-mesont user-mgpt user-mofff user-phonon user-plumed user-ptm user-qtb user-reaction user-sdpd user-smd user-smtbq user-sph user-tally user-uef user-yaff
2021-02-04sundials: add new version (#21488)Cody Balos1-0/+1
2021-02-04superlu: Add e4s testsuite-inspired smoke test (#21230)Sergei Shudler1-1/+78
2021-02-04py-xarray: add v0.16.2 (#21489)Adam J. Stewart1-3/+8
2021-02-04[pkg][new version] Provide draco@7.9.1 (#21486)Kelly (KT) Thompson1-1/+7
+ Provide optional variant `pythontools` (default False) that adds a run-time dependency on `py-matplotlib`. + Latest versions require `cmake@3.18:` to support cuda features. + Enable a cmake option that forcibly disables qt support. Previously, draco would enable qt support if it was available in the local build environment (outside of spack).
2021-02-04update: update pfunit releases (#21485)Kurt Sansom1-0/+3
2021-02-04parallelio: add necessary resources (#21477)m-shunji1-0/+10
Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
2021-02-04Provide eospac-6.4.2. (#21476)Kelly (KT) Thompson1-0/+2
2021-02-04Fix usage of PythonPackage.test outside of PythonPackage (#20555)Adam J. Stewart2-4/+22
2021-02-04py-numpy: Fix for new version of numpy with Fujitsu compiler. (#21479)Tomoki, Karatsu6-34/+34
* Change the version to apply patches. * Change the name of the Fujitsu compiler to 'fujitsu' in numpy.
2021-02-04Python: add maintainer(s) (#21125)Adam J. Stewart3-1/+7
* Python: add maintainer(s) * Fix unit tests
2021-02-04py-mypy: add v0.800 (#21386)Adam J. Stewart1-1/+2
2021-02-04Graphviz: don't build ghostscript when ~ghostscript (#19615)Seth R. Johnson1-19/+25
* graphviz: Remove ghostscript requirement when ~ghostscript * Add doc variant and patch for 2.44.1 * Patch does not apply * Update graphviz versions, using archives rather than git hash * Complete implementation of doc variant * Fix typo
2021-02-04dbcsr: add opencl as a third backend (#21468)Harmen Stoppels1-6/+23
2021-02-04spack external find: allow to search by tags (#21407)Massimiliano Culpo9-0/+18
This commit adds an option to the `external find` command that allows it to search by tags. In this way group of executables with common purposes can be grouped under a single name and a simple command can be used to detect all of them. As an example introduce the 'build-tools' tag to search for common development tools on a system
2021-02-03py-flufl-lock: new recipe (#21334)Andrew-Dunning-NNL1-0/+24
* py-flufl-lock: new recipe * py-flufl-lock: fix typing extension when no longer provisional
2021-02-04link gettext properly for git when gettext does not provide libintl (#21472)Greg Becker1-2/+3
2021-02-03intel-oneapi-compilers/mpi: add module support (#20808)Frank Willmore2-0/+48
Facilitate running intel-oneapi-mpi outside of Spack (set PATH, LD_LIBRARY_PATH, etc. appropriately). Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2021-02-03intel-oneapi-compilers: add to LD_LIBRARY_PATH so that it finds libimf.so ↵Frank Willmore1-22/+31
(#20717) * add to LD_LIBRARY_PATH so that it finds libimf.so * amrex: fix handling of CUDA arch (#20786) * amrex: fix handling of CUDA arch * amrex: fix style * amrex: fix bug * Update var/spack/repos/builtin/packages/amrex/package.py * Update var/spack/repos/builtin/packages/amrex/package.py Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * ecp-data-vis-sdk: Combine the vis and io SDK packages (#20737) This better enables the collective set to be deployed togethor satisfying eachothers dependencies * r-sf: fix dependency error (#20898) * improve documentation for Rocm (hip amd builds) (#20812) * improve documentation * astyle: Fix makefile for install parameter (#20899) * llvm-doe: added new package (#20719) The package contains duplicated code from llvm/package.py, will supersede solve. * r-e1071: added v1.7-4 (#20891) * r-diffusionmap: added v1.2.0 (#20881) * r-covr: added v3.5.1 (#20868) * r-class: added v7.3-17 (#20856) * py-h5py: HDF5_DIR is needed for ~mpi too (#20905) For the `~mpi` variant, the environment variable `HDF5_DIR` is still required. I moved this command out of the `+mpi` conditional. * py-hovorod: fix typo on variant name in conflicts directive (#20906) * fujitsu-fftw: Add new package (#20824) * pocl: added v1.6 (#20932) Made version 1.5 or lower conflicts with a64fx. * PCL: add new package (#20933) * r-rle: new package (#20916) Common 'base' and 'stats' methods for 'rle' objects, aiming to make it possible to treat them transparently as vectors. * r-ellipsis: added v0.3.1 (#20913) * libconfig: add build dependency on texinfo (#20930) * r-flexmix: add v2.3-17 (#20924) * r-fitdistrplus: add v1.1-3 (#20923) * r-fit-models: add v0.64 (#20922) * r-fields: add v11.6 (#20921) * r-fftwtools: add v0.9-9 (#20920) * r-farver: add v2.0.3 (#20919) * r-expm: add v0.999-6 (#20918) * cln: add build dependency on texinfo (#20928) * r-expint: add v0.1-6 (#20917) * r-envstats: add v2.4.0 (#20915) * r-energy: add v1.7-7 (#20914) * r-ellipse: add v0.4.2 (#20912) * py-fiscalyear: add v0.3.0 (#20911) * r-ecp: add v3.1.3 (#20910) * r-plotmo: add v3.6.0 (#20909) * Improve gcc detection in llvm. (#20189) Co-authored-by: Tom Scogland <tom.scogland@gmail.com> Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk> * hatchet: updated urls (#20908) * py-anuga: add new package (#20782) * libvips: added v8.10.5 (#20902) * libzmq: add platform conditions to libbsd dependency (#20893) * r-dtw: add v1.22-3 (#20890) * r-dt: add v0.17 (#20889) * r-dosnow: add v1.0.19 (#20888) * add version 1.0.16 to r-doparallel (#20886) * add version 1.3.7 to r-domc (#20885) * add version 0.9-15 to r-diversitree (#20884) * add version 1.3-3 to r-dismo (#20883) * add version 0.6.27 to r-digest (#20882) * add version 1.5 to r-rngtools (#20887) * add version 1.5.8 to r-dicekriging (#20877) * add version 1.4.2 to r-httr (#20876) * add version 1.28 to r-desolve (#20875) * add version 2.2-5 to r-deoptim (#20874) * add version 0.2-3 to r-deldir (#20873) * add version 1.0.0 to r-crul (#20870) * add version 1.1.0.1 to r-crosstalk (#20869) * add version 1.0-1 to r-copula (#20867) * add version 5.0.2 to r-rcppparallel (#20866) * add version 2.0-1 to r-compositions (#20865) * add version 0.4.10 to r-rlang (#20796) * add version 0.3.6 to r-vctrs (#20878) * amrex: add ROCm support (#20809) * add version 2.0-0 to r-colorspace (#20864) * add version 1.3-1 to r-coin (#20863) * add version 0.19-4 to r-coda (#20862) * add version 1.3.7 to r-clustergeneration (#20861) * add version 0.3-58 to r-clue (#20860) * add version 0.7.1 to r-clipr (#20859) * add version 2.2.0 to r-cli (#20858) * add version 0.4-3 to r-classint (#20857) * add version 0.1.2 to r-globaloptions (#20855) * add version 2.3-56 to r-chron (#20854) * add version 0.4.10 to r-checkpoint (#20853) * add version 2.0.0 to r-checkmate (#20852) * add version 1.18.1 to r-catools (#20850) * add version 1.2.2.2 to r-modelmetrics (#20849) * add version 3.0-4 to r-cardata (#20847) * add version 1.0.1 to r-caracas (#20846) * r-lifecycle: new package at v0.2.0 (#20845) * add version 3.0-10 to r-car (#20844) * add version 3.4.5 to r-processx (#20843) * add version 1.5-12.2 to r-cairo (#20842) * add version 0.2.3 to r-cubist (#20841) * add version 2.6 to r-rmarkdown (#20838) * add version 1.2.1 to r-blob (#20819) * add version 4.0.4 to r-bit (#20818) * add version 2.4-1 to r-bio3d (#20816) * add version 0.4.2.3 to r-bibtex (#20815) * add version 3.1-4 to r-bayesm (#20807) * add version 1.2.1 to r-backports (#20806) * add version 2.0.3 to r-argparse (#20805) * add version 5.4-1 to r-ape (#20804) * add version 0.8-18 to r-amap (#20803) * r-pixmap: added new package (#20795) * zoltan: source code location change (#20787) * refactor path logic * added some paths to make compilers and libs discoverable * add to LD_LIBRARY_PATH so that it finds libimf.so and cleanup PEP8 * refactor path logic * adding paths to LIBRARY_PATH so compiler wrappers will find -lmpi * added vals for CC=icx, CXX=icpx, FC=ifx to generated module * back out changes to intel-oneapi-mpi, save for separate PR * Update var/spack/repos/builtin/packages/intel-oneapi-compilers/package.py path is joined in _ld_library_path() Co-authored-by: Robert Cohn <rscohn2@gmail.com> * set absolute paths to icx,icpx,ifx * dang close parenthesis Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: mic84 <mrosso@lbl.gov> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Chuck Atkins <chuck.atkins@kitware.com> Co-authored-by: darmac <xiaojun2@hisilicon.com> Co-authored-by: Danny Taller <66029857+dtaller@users.noreply.github.com> Co-authored-by: Tomoyasu Nojiri <68096132+t-nojiri@users.noreply.github.com> Co-authored-by: Shintaro Iwasaki <siwasaki@anl.gov> Co-authored-by: Glenn Johnson <glenn-johnson@uiowa.edu> Co-authored-by: Kelly (KT) Thompson <KineticTheory@users.noreply.github.com> Co-authored-by: Henrique Mendonça <henrique@users.noreply.github.com> Co-authored-by: h-denpo <57649496+h-denpo@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Thomas Green <tomgreen66@hotmail.com> Co-authored-by: Tom Scogland <tom.scogland@gmail.com> Co-authored-by: Thomas Green <ca-tgreen@gw4a64fxlogin00.head.gw4.metoffice.gov.uk> Co-authored-by: Abhinav Bhatele <bhatele@cs.umd.edu> Co-authored-by: a-saitoh-fj <63334055+a-saitoh-fj@users.noreply.github.com> Co-authored-by: QuellynSnead <quellyn@lanl.gov>
2021-02-03py-atpublic: new recipe (#21332)Andrew-Dunning-NNL1-0/+22
2021-02-03acts: Add version 5.0 (#21466)Hadrien G1-0/+1
2021-02-03Set the variant to alway be true since it is requires cuda. (#21358)Brian Van Essen1-0/+1
2021-02-03adding environment to OneMKL packages so that examples will build (#21377)Frank Willmore2-0/+42
2021-02-03sundials: expose monitoring build option (#21429)Josh Essman1-0/+10
2021-02-03Add cuda as opencl provider (#21464)Harmen Stoppels1-0/+3
2021-02-03http-load: Fix checksum error (#21459)Tomoyasu Nojiri1-4/+4
2021-02-03http-post: Fix checksum error (#21460)Tomoyasu Nojiri1-4/+4
2021-02-03http-get: Fix checksum error (#21458)Tomoyasu Nojiri1-4/+4
2021-02-03http-ping: Fix checksum error (#21457)Tomoyasu Nojiri1-4/+4
2021-02-03symlinks: Fix checksum error (#21456)Tomoyasu Nojiri1-3/+4
2021-02-03py-dulwich: Fix python depend (#21461)Tomoyasu Nojiri1-1/+1
2021-02-03superchic: added new package (#21463)iarspider1-0/+51
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-02-02Updated TAU v2.30.1. (#21453)sameershende1-0/+1
2021-02-02amrex: new version 21.02 (#21426)mic841-0/+1
2021-02-02New package: apfel (#21440)iarspider1-0/+35
2021-02-02openPMD-api: 0.13.2 (#21450)Axel Huebl1-0/+1
2021-02-02py-bash-kernel: new package (#21441)Andrew-Dunning-NNL1-0/+18
* py-bash-kernel: new package * py-bash-kernel: remove git bash kernel dependency
2021-02-02add py-python-fsutil recipe (#21449)Bryan Herman1-0/+19
2021-02-02intel-xed: add patch to 12.0.1 to fix segfault (#21436)Mark W. Krentel2-0/+20
Fix segfault due to uninitialized data when trying to decode some cases of data that aren't a valid instruction.
2021-02-02py-nbsphinx: new package (#21444)bryanherman1-0/+31
* added py-nbsphinx package * added a comment about nbsphinx use
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