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2021-01-28umesimd: add new package (#21370)iarspider1-0/+25
2021-01-28autoconf: fix v2.70 and patching procedure of bin/autom4te.in (#21255)Sergey Kosukhin1-4/+15
This PR adds: 1. A patch that fixes a bug in version 2.70 (will be fixed upstream in the next release: https://savannah.gnu.org/support/?110396). 2. A fix for the way we patch shebang in bin/autom4te.in. For 2, we need to keep the original modification timestamp of the file. Otherwise, we either get an empty man page for autom4te (versions 2.69 and before) or a failure at the build time (versions 2.70 and after). The difference has to do with the update of the missing script: https://git.savannah.gnu.org/cgit/automake.git/commit/lib/missing?id=a22717dffe37f30ef2ad2c355b68c9b3b5e4b8c7 It will take time until developers of Autotools-based packages adjust their scripts to the new version, therefore, 2.69 is marked as preferred.
2021-01-28Clingo: fix missing import (#21364)Adam J. Stewart1-0/+1
2021-01-28libpeas: restrict python version range, use pkgconfig virtual dependency ↵Tomoyasu Nojiri1-2/+2
(#21313)
2021-01-28fox: add dependency to glu virtual package (#21280)Tomoyasu Nojiri1-0/+1
2021-01-27New package: py-proglog (#20750)Jen Herting1-0/+21
* [py-proglog] created template * [py-proglog] added dependencies * [py-proglog] fixed pypi url * [py-proglog] removed fixmes, added homepage and description * [py-proglog] url -> pypi * [py-proglog] added dependency on setuptools
2021-01-27Update MSTK version (#21356)Rao Garimella1-1/+2
* New interface reconstruction package * forgot to put in CMake option for Jali * cleanup whitespace * fix lines with more than 79 chars * more long line cleanup * fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos * New interface reconstruction package * forgot to put in CMake option for Jali * cleanup whitespace * fix lines with more than 79 chars * more long line cleanup * fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos * fix bugs in CMake section * more compact cmake block * update hash for 1.2.10 and add 1.2.11 * update recipe for Portage 3.0.0 * removing old versions - they won't build with the new recipe and the url specification doesn't work for them * update version to 3.3.6 Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2021-01-27New package: py-pytest-benchmark (#21324)bryanherman1-0/+21
* added pytest-benchmark recipe * Update var/spack/repos/builtin/packages/py-pytest-benchmark/package.py Added Python2 dependence. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27New package: py-pytest-cpp (#21328)bryanherman1-0/+22
* added package py-pytest-cpp * Update var/spack/repos/builtin/packages/py-pytest-cpp/package.py package is !=5.4.0 use @:5.3.999 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27New package: py-pytest-timeout (#21340)bryanherman1-0/+21
* added package py-pytest-timeout * Update var/spack/repos/builtin/packages/py-pytest-timeout/package.py Added Python2. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27New package: py-openmc (#21351)bryanherman1-0/+56
* added package py-openmc * Update var/spack/repos/builtin/packages/py-openmc/package.py specify branch when using branch names for versions Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-openmc/package.py use run after fixture to install openmc lib Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-openmc/package.py Simplify copying openmc library to py-openmc prefix using install Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-openmc/package.py NumPy should be 1.9+ Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fix paren missing * Update var/spack/repos/builtin/packages/py-openmc/package.py fixed parens Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-openmc/package.py use v0.11.0 in URL Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27autoconf: add version 2.70 (#21362)eugeneswalker1-0/+1
2021-01-27flux: update to latest releases (#21306)Stephen Herbein2-44/+34
2021-01-27fix cpio for intel@18 (#21322)bryanherman1-1/+1
2021-01-27Add conflict for mpich 3.4.x for clang <= 7" (#21326)Harmen Stoppels1-0/+3
2021-01-27rdma-core: add 33.1 (#21361)Michael Kuhn1-0/+1
2021-01-27openmpi find external fixup (#21354)Greg Becker1-4/+5
2021-01-27Package/spades (#21227)Desmond Orton1-1/+2
Co-authored-by: codeandkey <jtst@iastate.edu>
2021-01-27added gawk version 5.1.0 (#21342)bryanherman1-0/+1
2021-01-27libecpint: initial add (#21353)Christoph Junghans1-0/+30
* libecpint: initial add * flake8
2021-01-27ELPA: Switch to HTTPS links. (#21352)Rémi Lacroix1-4/+4
2021-01-27py-dpath: new recipe (#21331)Andrew-Dunning-NNL1-0/+19
2021-01-27added package py-pytest-flakes (#21337)bryanherman1-0/+22
2021-01-27py-mailchecker: new recipe (#21346)Andrew-Dunning-NNL1-0/+19
2021-01-27py-jsonpath-ng: new recipe (#21347)Andrew-Dunning-NNL1-0/+23
2021-01-27LBANN: add support for building with OneDNN. (#21305)Brian Van Essen1-0/+3
2021-01-27OneDNN: add versions up to v2.1-rc (#21304)Brian Van Essen1-0/+6
2021-01-27portage: added v3.0.0, deleted old versions (#21293)Rao Garimella2-36/+77
old versions won't build with the new recipe and the url specification doesn't work for them Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2021-01-27vecgeom: add v1.1.9 release (#21341)Ben Morgan1-0/+1
2021-01-27Python extensions: consistently set LDSHARED to get Spack RPATHs (#21149)Sergey Kosukhin1-99/+56
Python extensions use CC and LDSHARED from the sysconfig module to build. When Spack installs Python, it replaces the Spack compiler wrappers in these values with the underlying compilers (since these wrappers are not useful outside of the context of running Spack). In order to use the Spack compiler wrappers when building Python extensions with Spack, Spack sets the LDSHARED environment variable when running `Python.setup_py` (which overrides sysconfig). However, many Python extensions use an alternative method to build (namely PythonPackage.setup_py), which meant that LDSHARED was not set (and RPATHs were not inserted for dependencies). This commit makes the following changes: * Sets LDSHARED in the environment: this applies to all commands executed during the build, rather than for a single command invocation * Updates the logic to set LDSHARED: this replaces the compiler executable in LDSHARED with the Spack compiler wrapper. This means that for some externally-built instances of Python, Spack will now switch to using the Spack wrappers when building extensions. The behavior is expected to be the same for Spack- built instances of Python. * Performs similar modifications for LDCXXSHARED (to ensure RPATHs are included for C++ codes)
2021-01-27gchp: added new package (#21310)William Downs1-0/+54
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-27dealii: added support for simplices, updated sundials (#20621)Luca Heltai1-13/+40
2021-01-27cxxtest: added new package (#21323)bryanherman1-0/+18
2021-01-27mesa: add dependency on zlib (#21325)bryanherman1-0/+1
When installing mesa in an offline environment, mesa tries to download zlib.
2021-01-27mxnet: Fix python lib installation (#21298)Baptiste Jonglez1-2/+5
2021-01-27py-h5py: add build dependency on py-wheel (#21320)Ben Morgan1-0/+1
h5py requires wheel at build time from version 3.0.0, based on the project's pyproject.toml.
2021-01-27lbann: add support for building just the LBANN core library (#21235)Brian Van Essen1-12/+22
Variants to disable vision libraries and NumPy support.
2021-01-27boost: restrict lower bound of ranges for two patches (#21321)bryanherman1-2/+2
2021-01-27knem: added a patch for v1.1.4 (#21312)Mohan1-0/+4
Co-authored-by: amd-toolchain-support <toolchainsupport@amd.com>
2021-01-27cdo: add v1.9.10 (#21315)Brian Spilner1-0/+1
2021-01-27fujitsu-ssl2: remove mentions of libfj90rt2.a (#21308)takanori-ihara1-3/+1
2021-01-27mafft: add v7.475 and build extensions (#21301)Glenn Johnson1-0/+4
2021-01-27r-xvector: add dependency on zlib (#21286)darmac1-0/+1
2021-01-27xterm: add dependency on termcap (#21314)Tomoyasu Nojiri1-0/+1
2021-01-27NVSHMEM package (#21279)Brian Van Essen3-0/+64
2021-01-27libsodium: Fix build on ppc64le (#21256)Baptiste Jonglez1-0/+13
On ppc64le and aarch64, Spack tries to execute any "config.guess" and "config.sub" scripts it finds in the source package. However, in the libsodium tarball, these files are present but not executable. This causes the following error when trying to install libsodium with spack: Error: RuntimeError: Failed to find suitable substitutes for config.sub, config.guess Fix this by chmod-ing the scripts in the patch() function of libsodium.
2021-01-26mpich: add 3.4.1 (#21302)Michael Kuhn1-0/+1
2021-01-26nextflow: new version (#21276)Anton Loukianov1-0/+1
2021-01-26ParaView: add ParaView-5.9.0 new release (#21268)Vicente Bolea1-2/+2
2021-01-26Update var/spack/repos/builtin/packages/py-shtab/package.pybryanherman1-1/+1
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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