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2024-05-10edm4hep: cleanup recipe, remove deprecated versions and patches (#44113)Juan Miguel Carceller2-86/+3
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10libtheora: Remove unneeded autoreconf section (#44063)Chris Marsh1-6/+0
* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
2024-05-10dla-future: Add 0.4.1 (#44115)Mikael Simberg1-0/+3
* dla-future: Add 0.4.1 * Use ninja as generator in dla-future
2024-05-10pika: Add 0.25.0 (#44114)Mikael Simberg1-0/+2
2024-05-10libhugetlbfs: Fix the build with an update to 2.24 (#44059)Stephen Sachs1-5/+15
Co-authored-by: Stephen Sachs <stesachs@amazon.com> Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-05-09flux-sched: set the version if the ver file is missing (#44068)Tom Scogland1-0/+4
* flux-sched: set the version if the ver file is missing problem: flux-sched needs a version, it normally gets this from a release tarball or from git tags, but if using a source archive or a git clone without tags the version is missing solution: set the version through cmake based on the version spack sees when the version file is missing * Update var/spack/repos/builtin/packages/flux-sched/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> --------- Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-09miniforge3: add new versions with mamba installation (#43995)Christopher Christofi1-39/+52
* miniforge3: add new version with mamba installation * fix styling * update maintainers * Fix variant directive ordering
2024-05-09Fix filtering external specs (#44093)Massimiliano Culpo1-0/+16
When an include filter on externals is present, implicitly include libcs. Also, do not penalize deprecated versions if they come from externals.
2024-05-09pythia8: add a cxxstd variant (#44077)Juan Miguel Carceller1-0/+14
* pythia8: add a cxxstd variant * Add multi=False, fix regexp --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-09kokkos-nvcc-wrapper: add missing versions (#44089)Richard Berger1-0/+4
2024-05-09mmg: Build & install shared libraries, add 5.7.2 & 5.7.3(#43749)Julien Cortial1-0/+3
2024-05-09Universal Ctags: Add version 6.1.20240505.0 (#44058)RĂ©mi Lacroix1-0/+3
2024-05-09package: libsodium update URL to GitHub (#44090)Vanessasaurus1-10/+6
Problem: the libsodium download endpoints are not reliable, they fail multiple times a day for several of our automated pipelines. Solution: use the GitHub releases and branches. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2024-05-09Kokkos: adding new release 4.3.01 (#44086)Luc Berger2-0/+3
2024-05-09Octopus 14.1 : Add new version hash (#44083)Ashwin Kumar Karnad1-0/+6
* octopus: add hash for new version * octopus: add --enable-silent-deprecation flag when @14.1:
2024-05-09amr-wind: add missing variants (#44078)Jon Rood1-16/+33
* amr-wind: add missing variants * Fix copy and paste. * waves2amr is only available on amr-wind@2.0 * Style. * Use satisfies.
2024-05-08Orca (standalone) 5.0.4 (#44011)alvaro-sch1-1/+2
* orca: added latest version 5.0.4 * Fixed openmpi versions
2024-05-08mpich: Add license (#43821)Ken Raffenetti1-1/+1
2024-05-08hipsparselt: new package (#44080)Sreenivasa Murthy Kolam2-0/+169
* Initial commit for adding hipsparselt recipe * correct the style errors * remove master version
2024-05-08gcc: use -idirafter for libc headers (#44081)Harmen Stoppels1-1/+1
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc headers. We're using `-isystem` for libc, which puts those headers too early in the search path. `-idirafter` fixes this so `include_next` works.
2024-05-08JAX: add v0.4.27, NCCL variant (#44071)Adam J. Stewart2-113/+131
2024-05-08add flag to turn off building tests and examples (#44075)Jake Koester1-0/+6
2024-05-08py-jsonargparse: add v4.28.0 (#44074)Adam J. Stewart1-0/+1
2024-05-08hypre: add cublas and rocblas variants (#44038)Jon Rood1-1/+12
* Add cublas and roblas variants to hypre. * Fix mistakes. * Remove newline. * Address suggestions.
2024-05-08Bump up the version for ROCm-6.1.0 (#43843)renjithravindrankannath58-66/+1054
* Bump up the version for ROCm-6.1.0 * Style check error correction and patch files * Update for rocm-openmp-extras 6.1 * updating rocm-openmp-extras and math libraries with 6.1 * Style check error correcion * updating hipcub, hipfort & miopen-hip for 6.1 * Rocm-openmp-extras and some mathlib updates * iAudit error correction and rocmlir update * Updating dependency on suite-sparse and adding path * Style check error corection * hip-tensor 6.1.0 update * rdc 6.1 needs grpc 1.59.1 * rvs 6.1 updates and patch
2024-05-08darshan-runtime,darshan-util,py-darshan: add darshan-3.4.5 packages (#43989)shanedsnyder3-3/+10
* add darshan-3.4.5 packages, update URLs * py-setuptools version switches for py-darshan * more py-darshan test dependencies * try a conditional importlib_resources dependency
2024-05-08iq-tree: add new version delete duplicate package (#44043)snehring4-45/+5
* iq-tree: add new version delete duplicate package * Replace iqtree2 dependency orthofinder: replace iqtree2 with iq-tree@2 py-phylophlan: replace iqtree2 with iq-tree@2
2024-05-08cernlib: add 2023.08.14.0-free (#40211)andriish1-4/+13
* Update CERNLIB Update CERNLIB * Update package.py * Update package.py * [@spackbot] updating style on behalf of andriish * cernlib: merge crypto->crypt patches * cernlib: depends_on xbae when `@2023:` * cernlib: patch for Xbae and Xm link order (DSO) * [@spackbot] updating style on behalf of andriish --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08unmaintained pkg bump: 2024-05-05 (#44021)Alec Scott92-73/+166
* unmaintained pkgs: bump versions * Changes following review feedback * glm: update cmake dependency --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08gcc: add v14.1.0 (#44053)Massimiliano Culpo1-0/+2
2024-05-08mold: Replace maintainer (#44047)Tamara Dahlgren1-1/+1
* Remove maintainer at his request * Add msimberg as the maintainer
2024-05-08r: patch R-CVE-2024-27322 for `r@3.5:4.3.3` (#44050)Todd Gamblin1-0/+8
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07orca: switching to xz archives, removing old version (#44035)snehring1-38/+10
2024-05-07Add transformer engine package (#43982)Auriane R1-0/+48
* Add py-flash-attn@2.4.2 * Add py-transfomer-engine package --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-05-07gaudi: Add version 38.1 (#44055)Juan Miguel Carceller1-0/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-07Dyninst: update compiler requirements (#44033)Tim Haines1-1/+1
As of 13.0.0, Dyninst can now build with any Linux compiler.
2024-05-07fix(adios2): fix missing stdind include in 2.7 (#43786)Vicente Bolea2-0/+27
2024-05-07mold: Add 2.30.0 and 2.31.0 (#44034)Mikael Simberg1-0/+2
2024-05-07python-venv: use correct python name for which call (#44048)John W. Parent1-1/+2
2024-05-07Fix issues in packages with the new release of archspec (#44037)Massimiliano Culpo6-17/+8
2024-05-06neic-finitefault: adding new package and dependencies (#44032)snehring6-0/+638
* neic-finitefault: adding new package * py-obspy: adding new package * py-okada-wrapper: adding new package * py-pygmt: adding new package * py-pyrocko: adding new package --------- Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-06amr-wind: updates and fixes (#43993)Jon Rood1-24/+34
* Updates and fixes for AMR-Wind. * Add versions and update openfast constraints. * Style. * Fix version.
2024-05-06(py)-fenics-dolfinx: version update (#44002)Garth N. Wells2-1/+12
* Update DOLFINx to v0.8 * Fix typo
2024-05-06Add LSP client extension for Kakoune (#44000)James Taliaferro1-0/+19
* new package: kakoune-lsp * blacken * add myself as a maintainer
2024-05-06py-torchmetrics: add v1.4.0 (#44027)Adam J. Stewart2-14/+37
2024-05-06python: always use a venv (#40773)Harmen Stoppels43-204/+173
This commit adds a layer of indirection to improve build isolation with and without external Python, as well as usability of environment views. It adds `python-venv` as a dependency to all packages that `extends("python")`, which has the following advantages: 1. Build isolation: only `PYTHONPATH` is considered in builds, not user / system packages 2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where external / system python produces `bin/local` subdirs in Spack install prefixes. 3. Environment views are Python virtual environments (and if you add `py-pip` things like `pip list` work) Views work whether they're symlink, hardlink or copy type. This commit additionally makes `spec["python"].command` return `spec["python-venv"].command`. The rationale is that packages in repos we do not own do not pass the underlying python to the build system, which could still result in incorrectly computed install layouts. Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
2024-05-06proj: patch for modern cmake (#43780)John W. Parent2-0/+18
2024-05-06clingo bootstrap: remove 3.12 patch and concretizer workarounds (#44028)Harmen Stoppels3-29/+12
2024-05-06External package detection for compilers (#43464)Greg Becker35-649/+1172
This creates shared infrastructure for compiler packages to implement the detailed search capabilities from the `spack compiler find` command for the `spack external find` command. After this commit, `spack compiler find` can be replaced with `spack external find --tag compiler`, with the exception of mixed toolchains.
2024-05-06archspec: add v0.2.4 (#44022)Massimiliano Culpo1-0/+1