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2017-04-14New package: tut (#3844)Christoph Junghans1-0/+41
2017-04-14Add a package for FLASh (bioinformatics) (#3848)George Hartzell1-0/+42
Add a package for FLASh.
2017-04-14Add a py-pkgconfig package (#3815)Adam J. Stewart2-1/+43
2017-04-14vim wasn't linking against ncurses (#3838)George Hartzell1-0/+2
See #3829. Vim's configure was searching for ncurses instead of ncursesw.
2017-04-14New package: PEGTL (#3839)Christoph Junghans1-0/+44
2017-04-14New package: pstreams (#3840)Christoph Junghans1-0/+39
2017-04-14Readline package: Add ncurses library directory to link line. (#3802)Jean-Paul Pelteret1-1/+5
Resolves a issue with finding the ncurses library on MacOS.
2017-04-14New package: MAD's numdiff (#3811)Christoph Junghans1-0/+45
2017-04-14Prevent users from building Score-P on macOS (#3825)Adam J. Stewart1-0/+5
* Prevent users from building Score-P on macOS * Add link to original reporting issue
2017-04-14Add variant to mvapich2 to control thread level (#3832)Adam J. Stewart1-0/+10
2017-04-14Convert Image-Magick to AutotoolsPackage (#3828)Adam J. Stewart1-7/+6
2017-04-14Remove mawk dependency from ncurses (#3782)Adam J. Stewart1-3/+0
2017-04-14Add cub-1.4.1 required by cntk. (#3819)健美猫1-2/+3
2017-04-14A new package: bowtie. (#3837)健美猫1-0/+53
2017-04-13New package: h5part (#3821)Christoph Junghans2-0/+72
2017-04-13New package: pugixml (#3830)Christoph Junghans1-0/+35
2017-04-12Fix adios (#3814)Michael Kuhn1-1/+1
adios currently only supports zfp <= 0.5.0 due to an API change.
2017-04-12Add package for nginx@1.12.0 (#3810)George Hartzell1-0/+44
* Add package for nginx@1.12.0 Includes support for: - zlib - pcre (and pcre-jit) - openssl (https support) Built and basics tested on CentOS 7. I haven't tested the `https` support [yet]. * Include final bit of doc string sentence. I trimmed the docstring that I lifed from https://nginx.org/en a bit too aggressively and left a '...' to remind me to fix it. Apparently I need more obvious reminders. Thanks @davydden!
2017-04-12Apply a patch to allow valgrind 3.12 to build on MacOS >= 10.11 (#3808)Jean-Paul Pelteret2-0/+17
2017-04-12Update xrootd versions (#3807)Javier1-1/+5
* Update xrootd versions * Removing unnecessary url_for_version method
2017-04-11brigand: New Package (#3801)Nils Deppe1-0/+45
2017-04-11New package: f90cache (#3804)Christoph Junghans1-0/+38
2017-04-11blaze: New Package (#3803)Nils Deppe1-0/+57
2017-04-11added stat version 3.0.1 (#3800)Gregory Lee1-12/+12
2017-04-11Help cscope find ncursesw library (#3785)Adam J. Stewart1-7/+5
* Help cscope find ncursesw library * Overwrite CURSES_LIBS at build time
2017-04-11spherepack: New package (#3797)Erik Schnetter1-0/+42
2017-04-11pocl: New version 0.14 (#3799)Erik Schnetter1-4/+6
2017-04-11Update ccache version to 3.3.4 (#3794)Javier1-2/+3
* Update ccache version to 3.3.4 * Flake8 fix
2017-04-11Install the shell completion scripts (#3784)George Hartzell1-0/+5
* Install the shell completion scripts Install the `git-completion.{bash,tcsh,zsh}` and `git-prompt.sh` into `$(spack location -i git)/share/` (aka `prefix.share/`). * Use copy_tree to copy all the files The dest dir already exists, so install_tree()'s not an option.
2017-04-11Fixup gcc@4.9{0,1,2} build on darwin (#3789)healther1-2/+2
2017-04-10Added a package for the MDAnalysis toolkit. (#3576)Brian Van Essen4-1/+103
* Added a package for the MDAnalysis toolkit. * Added the dependency on setuptools. * Added the rest of the dependencies to the py-mdanalysis package. Also added the griddataformats and seaborn packages to satisfy requirements. * Removed seaborn package since it has been recently added. * Fixed flake8 error * Removed inadvertent commits. * Cleaned up reviewers feedback.
2017-04-10Rename libson-c to json-c, add new version (#3776)Adam J. Stewart3-7/+8
2017-04-10Fix build, add version info for 1.3.0 (#3773)George Hartzell1-0/+3
Update the package recipe w.r.t. AutotoolsPackage changes, now builds "out of source". Update the package with version info for 1.3.0. > Mosh 1.3.0 released, with John Hood as release lead. The release includes broader platform compatibility, robustness improvements, better testing, and fixes for excess CPU consumption in some cases. We have switched to semver.org-style versioning and will increment the minor version number whenever we add new functionality. (In our previous practice, this release would probably have been called “1.2.7.”) Tested on CentOS 7.
2017-04-10Fix namespaced python packages (#3757)healther2-2/+6
* Fix namespaced python packages * Update package.py * Update package.py * fix typo
2017-04-10A new package: cudnn. (#3770)健美猫1-0/+43
2017-04-09A new pacakge: hstr(hh). (#3769)健美猫1-0/+42
2017-04-08Append system PKG_CONFIG_PATH on Cray instead of prepend (#3766)Adam J. Stewart1-2/+2
2017-04-08Update libbson and libmongoc to 1.6.2 (#3767)Michael Kuhn2-8/+12
2017-04-07Add info for go@1.8.1 (#3765)George Hartzell1-0/+1
2017-04-07Adding ZFP version 0.5.1 and variant for uint8 bit stream word type (#3753)Mark C. Miller1-9/+28
* adding 0.5.1 and variant for uint8 bit stream word type * Revisions as per davydden * fixing style (flake8) issues * - switched to derive from MakefilePackage - fixed typo in variant check - Confirmed installs correctly with bswtuint8 variant * added build method; changed zfp_incdir to incdir
2017-04-07lmod: added new version (#3763)Massimiliano Culpo1-0/+1
2017-04-07Disable OpenSSL test dependency until we have proper support. (#3760)Todd Gamblin1-4/+7
2017-04-07Add a package for the NAS Parallel Benchmarks (NPB) (#3762)Adam J. Stewart1-0/+202
2017-04-07Add the rockstar package (#3680)Matthew Scott Krafczyk3-0/+90
* Add the rockstar package * Add rockstar to yt. * Correct signature of prep_yt. * Correct rockstar package installation process Needed to change the way the necessary prefixes are found as well as how the completed package is copied. There should probably be a way to do the copying in a more 'spack' way. * Add license * Add description. * Set no hdf5 variant as default. * Use copy_tree for copying files * Use MakefilePackage * Address concerns from @adamjstewart * Fix flake8 errors.
2017-04-07Update LLVM to version 4.0.0 (#3683)Jean-Paul Pelteret1-2/+21
* Update LLVM to version 4.0.0 * Add arguments to prevent lldb, polly building when using ~<variant>
2017-04-07Add the 'shared' variant for protobuf. (#3703)健美猫1-0/+11
2017-04-07remove mxml CFLAGS option that was breaking configure (fixes #3700) (#3706)Mark Olesen1-4/+7
- provide urls for versions 2.7, 2.6, 2.5 (archive copies)
2017-04-07subversion: spec.satisfies('^swig') does not work; replace spec.satisfies by ↵Milton Woods1-2/+2
"in spec" (#3662)
2017-04-07Package: ISAAC (#3733)Axel Huebl2-0/+102
Adds the [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac) in situ volume rendering library. The ISAAC library can be build with render/filter kernels for Nvidia GPUs via CUDA or with a more general backend via [Alpaka](https://github.com/ComputationalRadiationPhysics/alpaka) with support for Nvidia GPUs (via CUDA) and multicore CPUs. Since alpaka is not yet part of spack, the second variant is still commented out. Packages - `isaac`: header-only library with dependencies to other C++ libraries that is then used in simulations - `isaac-server`: stand-alone executable that connects N simulations with M clients in a `N simulations:1 server` and `1 server:M clients` fashion (ISAAC clients simply speak websockets/JSON and are usually [HTML/JS pages](https://github.com/ComputationalRadiationPhysics/isaac/tree/v1.2.0/client)) Downstream Usage PIConGPU uses ISAAC for in situ visualization. References - [Repo](https://github.com/ComputationalRadiationPhysics/isaac) (LGPLv3+) - [Documentation](http://computationalradiationphysics.github.io/isaac/) - [Talk at GTC2016](http://on-demand.gputechconf.com/gtc/2016/video/S6294.html)
2017-04-07mallocMC: Spack Package (#3745)Axel Huebl1-0/+55
Adds a package for mallocMC, a memory allocator for many core architectures. This project provides a framework for fast memory managers on many core accelerators. Currently, it supports NVIDIA GPUs of compute capability sm_20 or higher through the ScatterAlloc algorithm. mallocMC is header-only. Downstream Dependencies PIConGPU and other projects of HZDR's *Computational Radiation Physics* group References - Markus Steinberger, Michael Kenzel, Bernhard Kainz and Dieter Schmalstieg. *ScatterAlloc: Massively parallel dynamic memory allocation for the GPU*, Innovative Parallel Computing (InPar), 2012, https://doi.org/10.1109/InPar.2012.6339604 - Carlchristian Eckert. *Enhancements of the massively parallel memory allocator ScatterAlloc and its adaption to the general interface mallocMC*, Junior Thesis (grosser Beleg), 2014, http://dx.doi.org/10.5281/zenodo.34461
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