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2021-02-11Update GROMACS package (#21617)M. Eric Irrgang1-22/+45
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-10meson: remove cmake dependency (#21607)Michael Kuhn2-1/+1
cmake was added as a runtime dependency to meson in #20449. This introduces an unnecessary implicit cmake dependency, which increases build time for meson considerably. cmake is only one of many methods for finding dependencies (pkg-config, qmake etc.), which are also not runtime dependencies of meson. Add cmake as a build dependency to mesa instead.
2021-02-10adios2: Add 2.7.1 release (#21584)Axel Huebl1-0/+1
Add the latest release of ADIOS2.
2021-02-10[py-chalice] py-typing causes issues with python >= 3.5 (#21202)Jen Herting1-1/+1
* [py-chalice] py-typing causes issues with python >= 3.5 * [py-chalice] changed upperbound on typing
2021-02-10ascent: add version v0.6.0 (#21573)eugeneswalker1-0/+3
2021-02-10py-llvmlite: Changing build options when using the FUJITSU compiler (#21585)a-saitoh-fj1-3/+7
2021-02-10[py-uproot4] add new versions (#21588)vvolkl1-0/+2
2021-02-10New package: py-dask-sphinx-theme (#21582)a-saitoh-fj1-0/+18
2021-02-10pandoc modified:package.py (#21581)a-saitoh-fj1-0/+2
2021-02-10raxml-ng: Fixed typo: (#21580)h-denpo1-1/+1
2021-02-10Update package.py (#21577)Matt Schramm1-1/+1
2021-02-10sollve: deprecate the sollve package (#21578)Shintaro Iwasaki1-2/+3
2021-02-09New package: py-moviepy (#20751)Jen Herting1-0/+31
* [py-moviepy] created template * [py-moviepy] added dependencies * [py-moviepy] removed fixmes, added homepage and description * [py-moviepy] updated to pypi and updated checksum * [py-moviepy] added setuptools dependency * [py-moviepy] more specific version limit * [py-moviepy] added checksum for version 1.0.1 * [py-moviepy] numpy restriction not nesessary here
2021-02-09New Package: py-xgboost (#21470)kean-smullen-nnl1-0/+39
* new python package py-xgboost added * py-xgboost spack style applied * py-xgboost: Addressing PR #21470 comments. Added variant descriptions and fixed scikit-learn when clause
2021-02-10xsdk: update petsc4py, strumpack dependencies (#21569)Satish Balay1-3/+4
2021-02-093DTK: add new package (#20931)Adam J. Stewart2-0/+110
* 3DTK: add new package * Add missing opencv variants Co-authored-by: Michael Kuhn <michael@ikkoku.de> * Fix cmake version req, add eigen dep * Prefer trunk version * Tell 3dtk where to find eigen * Fix installation * Fix installation Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2021-02-09ParaView, LLVM: add -shared-intel to solve intel linking failures (#18195)Ethan Stam2-2/+14
2021-02-09New Package r-reproducible (#21434)Desmond Orton1-0/+45
2021-02-09Fix groff build with long interpeter line (#21549)Glenn Johnson3-0/+27
This PR fixes the case where groff fails to build if the spack install path is really long. There are a couple of perl scripts that get built, and used, during the build phase that will fail when the perl interpreter line is too long. Filtering the lines will not work because the files don not exist after the configure phase and patching after the build phase is too late. This PR runs the scripts explicitly with the spack perl via the $(PERL) variable in the call to the script.
2021-02-09Update the Spack R BioConductor packages to Bioconductor-3.12 (#21575)Glenn Johnson193-635/+1177
2021-02-09biobambam2: Add test method and test scripts. (#21504)takanori-ihara1-0/+20
Co-Authored-By: Tamara Dahlgren <dahlgren1@llnl.gov>
2021-02-09add charliecloud 0.22 (#21574)Jordan Ogas1-0/+1
2021-02-09root: 6.22.04 works with xrootd 5 (#21572)Dr. Christian Tacke1-1/+2
ROOT version 6.22.04 has been ported to support xrootd 5. So let's support that. See: https://github.com/root-project/root/commit/a33b156e3bf809343eda08150666154a
2021-02-09Relion 3.1.1 patch for Ubuntu18.04 (#21556)Evan Bollig2-0/+33
2021-02-09add conduit 0.7.0 release (#21558)Cyrus Harrison1-0/+1
2021-02-09Procedure to deprecate old versions of software (#20767)Adam J. Stewart17-79/+79
* Procedure to deprecate old versions of software * Add documentation * Fix bug in logic * Update tab completion * Deprecate legacy packages * Deprecate old mxnet as well * More explicit docs
2021-02-09penblas: fix link error in dependent packages. (#21561)Toyohisa Kameyama1-0/+4
2021-02-09Add more cmake patch releases (#21562)Harmen Stoppels1-0/+5
2021-02-09py-pandas: add v1.2.2 (#21568)Adam J. Stewart1-0/+1
2021-02-09bolt: add new versions (#21550)Shintaro Iwasaki1-0/+2
2021-02-09replace libelf with elfutils in hip-rocclr (#21421)Sreenivasa Murthy Kolam1-1/+1
2021-02-08New package: py-msgpack-numpy (#21548)Jen Herting1-0/+23
* [py-msgpack-numpy] created template * [py-msgpack-numpy] added dependencies * [py-msgpack-numpy] added homepage and description. removed fixmes. fixed copyright date * [py-msgpack-numpy] url -> pypi
2021-02-08py-tensorflow-estimator: update for 2.4.0 (#21546)Andrew W Elble1-17/+14
* py-tensorflow-estimator: update for 2.4.0 * build/run deptypes, switch to common tmpfile logic
2021-02-08py-tensorboard: add new versions (#21545)Andrew W Elble2-18/+27
2021-02-08xforms: new package (#21535)ketsubouchi1-0/+26
2021-02-08New package: py-imageio-ffmpeg (#20749)Jen Herting1-0/+25
* [py-imageio-ffmpeg] created template * [py-imageio-ffmpeg] added dependencies * [py-imageio-ffmpeg] added runtime dependency * [py-imageio-ffmpeg] removed fixmes, added homepage and description * [py-imageio-ffmpeg] url -> pypi and updated checksum
2021-02-08amdtoolchain support for openfoam (#21536)AMD Toolchain Support1-4/+4
2021-02-08Smoke test for parallel-netcdf package (#21400)Sergei Shudler1-0/+32
2021-02-08petsc: update to version 3.14.4, and petsc4py to 3.14.1 (#21544)Satish Balay2-1/+6
2021-02-08Strumpack slate variant (#21542)Pieter Ghysels1-2/+6
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-08ldak: build only x86_64 linux. (#21414)Toyohisa Kameyama1-9/+11
2021-02-08paraview: disable VTK_PYTHON_OPTIONAL_LINK for cce (#21357)Howard Pritchard1-0/+2
when building paraview 5.8 or newer. See https://gitlab.kitware.com/vtk/vtk/-/merge_requests/7482for background info. Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-02-08petsc4py: workaround LDSHARED change in ↵Satish Balay2-0/+15
3cc5b7adc7d2167646d6a049d64c710d98e1d6f0 (#21541)
2021-02-08Add ReFrame 3.4 (#21540)victorusu1-0/+2
2021-02-08py-dvc: new package (#21516)Andrew-Dunning-NNL1-0/+61
* py-dvc: new package * Update var/spack/repos/builtin/packages/py-dvc/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-dvc: add version dependency for py-networkx Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-08cp2k: added support for AMD toolchain (#21371)AMD Toolchain Support3-28/+55
2021-02-08libqglviewer: add dependency on glu (#21438)Tomoyasu Nojiri1-0/+1
2021-02-08pangolin: add dependency on glu (#21439)Tomoyasu Nojiri1-0/+1
2021-02-08mumps: don't put absolute path in soname (#21247)lpoirel1-2/+2
2021-02-08py-matplotlib: clarify backend variant description (#21520)Adam J. Stewart1-1/+3
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