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2020-07-30Update LAMMPS package (#17715)Rémi Lacroix1-3/+6
* LAMMPS: Use LATTE 1.2.2 starting with version 20200602. Version 20200602 and upper requires Latte 1.2.2. This caused the internal Latte distribution to be used instead of the Latte install provided by Spack. * LAMMPS: Add new versions 20200630 and 20200721.
2020-07-30dcmtk: fixed type error (#17758)ketsubouchi1-0/+10
* dcmtk: fixed type error * Update var/spack/repos/builtin/packages/dcmtk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30New package: IDL (#17451)Francine Lapid1-0/+41
* New package: IDL * Update var/spack/repos/builtin/packages/idl/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/idl/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * added license header and changed url_for_version to just url * removed unused imports, addressed comments * removed trailing whitespace on line 14 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30mozjs@1.8.5: fix compile issue (#17594)darmac3-2/+187
* mozjs@1.8.5: fix compile issue * mozjs: refine method
2020-07-30vtk: Support for new option to enable MPI. (#17727)Tomoki, Karatsu1-5/+10
2020-07-30backport Mesa MR#6053 to prevent multiply-defined symbols (#17720)Daryl W. Grunau2-0/+25
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-07-30Fixing problems caused by a comfused spack concretizer (#17797)G-Ragghianti1-1/+3
2020-07-30Add variants to squashfs for different compression algorithms (#17755)Harmen Stoppels1-2/+30
2020-07-30New package: py-uvw (#17719)Lucas Frérot1-0/+28
* py-uvw: added package for versions 0.0.7 and 0.3.1 * py-uvw: added py-setuptools as dependency
2020-07-30flang: make sure to find libstdc++ if needed (#17480)Dr Owain Kenway2-0/+10
2020-07-30Python: added v3.8.4, v3.8.5, v3.7.7, v3.7.8, v3.6.11 (#17775)Adam J. Stewart1-2/+9
Also added older version in the 3.6 and 3.5 series
2020-07-30MAGMA isn't compatible with CUDA 11 (#17753)G-Ragghianti1-0/+1
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30slate package: resolve issues with cuda version and fortran compiler name ↵G-Ragghianti1-3/+6
(#17759) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30couchdb: new package at v3.1.0 (#17595)darmac1-0/+41
2020-07-30lhapdf5: new package at v5.9.1 (#17746)Wouter Deconinck1-0/+46
During configure lhapdf5 searches for python. On one system I tested on (ubuntu 19.10) it finds a system installed python3 and fails to create the python extension. Variant named to make explicit that this is only a python2 extension.
2020-07-30latte: added v1.2.2 and master (#17714)Rémi Lacroix1-1/+2
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30zipkin: new package at v2.21.5 (#17780)darmac1-0/+28
2020-07-29New package: r-hh (#17667)Glenn Johnson1-0/+46
* New package: r-hh * Add short description Add the project one liner for a short description that will be used for `module whatis`.
2020-07-29Updated iq-tree package (#17690)ilbiondo1-3/+5
2020-07-29Intel packages: new versions (#17692)Robert Mijakovic8-0/+15
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote. * Fixes a typo with one of the sha256 checksum.. * Adds version entries for new versions of Intel packages. * Adds hashes for new versions of Intel packages. * Adds missing hash of Intel compiler. * Adds the newest version of Intel MPI 2019.8. * Fixes hash for intel-parallel-studio and intel-tbb. * Fixes version number of Intel MPI. Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-07-29CMake: Fix compilation with Intel compilers on some systems. (#17693)Rémi Lacroix2-0/+15
Systems with older GNU compilers were not affected. This commit fixes #15901 and fixes #17605.
2020-07-29pgi: update to 20.4 (#17696)Tiziano Müller1-0/+1
2020-07-29libmodbus: new package (#17778)Shayna Kapadia1-0/+26
* libmodbus:adding new package * fixing testing failures * fixing flake 8 errors * fixing flake 8 errors Co-authored-by: Kapadia <kapadia2@llnl.gov>
2020-07-29update version to 1.1.5 (#17701)Rao Garimella1-1/+2
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-07-29use libquadmath only x86_4 and ppcle. (#17728)Toyohisa Kameyama1-0/+11
2020-07-29openfoam package updates, scotch version update (#17731)Mark Olesen2-7/+11
* openfoam: use MPI 'headers' property (fixes #17730) * openfoam: +spdp variant, usable for OpenFOAM 1906 and later in contrast to +float32, which uses single-precision throughout, +spdp uses the following: - single-precision for most internals - double-precision for linear solver * openfoam: add m4 as build dependency * scotch: update to 6.0.9 released Oct 2019 Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-29CLAW: Add version 2.0.2 (#17733)Valentin Clement (バレンタイン クレメン)1-0/+1
2020-07-29New package: vgm (#17741)Wouter Deconinck1-0/+49
* [vgm] new package Virtual Geometry Model (VGM) * [vgm] Updated description
2020-07-29New package: geant4-vmc (#17745)Wouter Deconinck1-0/+34
* [geant4-vmc] New package * [geant4-vmc] aligned spacing
2020-07-29Add Caliper v2.4.0 (#17750)David Böhme1-11/+9
* Add Caliper v2.4.0 * Use built-in gotcha
2020-07-29Adding pic support for Kokkos (#17751)Julien Loiseau1-0/+5
* Adding pic support for Kokkos * Update pic for kokkos
2020-07-29elang add depends_on('ncurses', type='link') (#17761)h-denpo1-0/+1
2020-07-29libunwind: add +pic variant (#17762)Mark W. Krentel1-2/+8
Libunwind already builds a shared library. The +pic variant adds the compiler pic flag to the static archive so that it can be linked into another shared library.
2020-07-29eagle: fix CC=gcc and delete march=native (#17763)ketsubouchi1-0/+7
2020-07-29spades: add 3.14.1 (#17776)Justin S1-0/+1
2020-07-29Tweak to EOSPAC for gcc@10 Support (#17777)Robert Pavel1-6/+11
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior and gnu changing to -fno-common. Added conditional argument to support bleeding edge compilers
2020-07-29update URL and sha256 for aws-parallelcluster 2.8.0 (#17685)tilne1-1/+2
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-07-29[bowtie2] added version 2.4.1 (#17748)Jen Herting1-0/+1
2020-07-29Boost: Update conflicts for version 1.73.0. (#17774)Rémi Lacroix1-1/+1
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
2020-07-29express: add cast for %fj (#17764)ketsubouchi1-0/+1
2020-07-29clamcv: Add curl dependency. (#17765)Toyohisa Kameyama1-0/+1
2020-07-29Add new package: solr (#17597)darmac1-0/+28
* Add new package: solr * refine version order
2020-07-29zlib: style changes to check if set of changed files is computed correctlyMassimiliano Culpo1-3/+2
2020-07-29qt: fix build with ~ssl. (#17767)Matthias Wolf1-1/+1
OpenSSL was pulled from the spec too early, leading to failures when attempting to build with ~ssl.
2020-07-29perl: add missing berkeley-db dependency (#17771)Andrew W Elble1-0/+1
2020-07-29lmod: change variant defaults to match Lmod's defaults (#17770)Massimiliano Culpo1-2/+2
2020-07-28Amrvis: update branch name (#17718)mic841-2/+2
2020-07-27Update darshan package with mpi variant (#17717)Patrick Gartung1-6/+11
* Update darshan package with nompi variant. * Change variant to mpi and default to True
2020-07-27r-adespatial: added new package (#17700)Glenn Johnson6-0/+172
This PR adds the r-adesaptial package and several other new packages as dependencies. - r-adegraphics - r-adephylo - r-phylobase - r-rncl - r-rnexml
2020-07-27r-dss: added new package at v2.36.0 with dependencies (#17661)Glenn Johnson6-1/+93
This PR adds the r-dss package and the r-bsseq package, also new, as a dependency. This includes the latest versions, which required updates to the following dependencies: - r-biocgenerics - r-iranges - r-s4vectors - r-summarizedexperiment Older versions of r-dss and r-bsseq are included as well to ensure compatibility with older versions of the above dependencies.
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