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2021-09-20gdb: new version v11.1 (#25920)Robert Underwood3-1/+15
2021-09-20New packages: py-imgaug (#25894)Jen Herting1-0/+31
* updates from sid * [py-imgaug] url -> pypi * [py-imgaug] added version 0.4.0 and fixed up dependencies * [py-imgaug] updated copyright Co-authored-by: Andrew Elble <aweits@rit.edu>
2021-09-20Allow setting variant name in AutotoolsPackage._activate_or_not (#26054)iarspider1-0/+2
2021-09-20 Fix R version (#26061)jacorvar1-1/+1
R version should be `3.0.0` instead of `3.00`.
2021-09-19added NOAA software team to maintainers list (#26057)Edward Hartnett1-4/+8
2021-09-19updating OmegaH to 9.34.1 (#26015)Vanessasaurus1-1/+1
2021-09-19updating kokkos to 3.4.01 (#26013)Vanessasaurus1-1/+2
2021-09-19updating singularity to 3.8.3 (#26020)Vanessasaurus1-3/+3
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-19Fix R version (#26047)jacorvar1-1/+1
R version should be `3.0.0`, in contrast to `3.00`.
2021-09-18Add v1.6.0 to Benchmark (#25996)Alec Scott1-1/+2
2021-09-18omegah: add version 9.34.1 (#25828)Cameron Smith1-0/+1
2021-09-18Add v0.935 to Angsd (#25995)Alec Scott1-1/+2
2021-09-19Python: use platform-specific site packages dir (#25998)Adam J. Stewart1-1/+1
2021-09-18cmake: allow gcc on macOS for newer versions (#25994)Seth R. Johnson1-5/+4
2021-09-18librsb: add v1.2.0.10 (#26044)Michele Martone1-1/+2
2021-09-18FFTW: Fix OpenMP Build on macOS (#26039)Axel Huebl1-0/+11
2021-09-18updating siesta to 4.0.2 (#26021)Vanessasaurus1-2/+5
2021-09-18updating universal ctags to 5.2.0.xxxx (#26024)Vanessasaurus1-1/+2
2021-09-18updating sparsehash to 2.0.4 (#26023)Vanessasaurus1-1/+2
2021-09-18updating htslib to 1.13 (#26012)Vanessasaurus1-1/+2
2021-09-18updating nco to 5.0.1 (#26014)Vanessasaurus1-1/+2
2021-09-18updating graphviz to 2.49.0 (#26011)Vanessasaurus1-0/+1
2021-09-18updating veloc to 1.5 and cleaning up spacing (#26025)Vanessasaurus1-7/+7
2021-09-18updating cloc to 1.9.0 (#26009)Vanessasaurus1-1/+2
2021-09-18updating poppler (#26016)Vanessasaurus1-1/+2
2021-09-18updating raxml to 8.2.12 (#26018)Vanessasaurus1-1/+2
2021-09-18updating protobuf (Gooooogle!) to 3.18.0 (#26017)Vanessasaurus1-39/+40
2021-09-18updating samtools to 1.13 (#26019)Vanessasaurus1-1/+2
2021-09-18updating spades to 3.15.3 (#26022)Vanessasaurus1-1/+2
2021-09-18updating gatk to 4.2.2.0 (#26010)Vanessasaurus1-73/+21
2021-09-17Convert RAJA, CHAI and Umpire to CachedCMakePackages (#25788)David Beckingsale3-105/+191
* Switch Umpire to CMakeCachedPackage * Fix missing import * Correct tests option in Umpire * Switch RAJA to CachedCMakePackage * Convert CHAI to CachedCMakePackage * Corrections in RAJA * Patches in Umpire & RAJA for BLT target export * Fixup style * Fixup incorrect use of cmake_cache_string
2021-09-17update tutorial version of hdf5 (#25368)Chris White5-117/+417
2021-09-17Bump reframe (#25970)Harmen Stoppels1-0/+1
2021-09-17Add ccache v4.4.1. (#25957)Olli Lupton1-0/+1
2021-09-17improve ascent package to use stages and cmake base (#25720)Cyrus Harrison1-73/+70
* improve ascent package to use stages and cmake base * style * more style
2021-09-17fmt: add variant for shared library (#25969)iarspider1-1/+5
2021-09-17variant build: openmp_ref should be openmp (#26006)eugeneswalker1-1/+1
2021-09-17gosam: new version 2.1.1 (#25985)iarspider1-4/+8
2021-09-16GCC: patch for gcc 10.3.0 ICE when using nvcc (#25980)Kurt Sansom1-0/+3
* fix: patch for gcc 10.3.0 ICE when using nvcc * fix: use URL reference instead * fix: add missing sha256sum
2021-09-16added package.py for GPTL (#25993)Edward Hartnett1-0/+47
2021-09-16workaround a cmake/rocm bug in heffte (#25948)Miroslav Stoyanov1-0/+4
2021-09-16Add v7.0.2 to Admixtools (#25997)Alec Scott1-6/+7
2021-09-16Fix for problem with cmake@3.21 (#25989)G-Ragghianti1-0/+3
2021-09-16New package: ROMS (#25990)AMD Toolchain Support1-0/+141
Co-authored-by: Mohan Babu <mohbabul@amd.com>
2021-09-16Bump sirius 7.2.x (#25939)Harmen Stoppels1-0/+2
2021-09-16Update HPX package (#25775)Mikael Simberg2-40/+82
* Add support for C++20 to HPX package * Enable unity builds in HPX package when available * Add support for HIP/ROCm to HPX package * Rearrange and update required versions for HPX package * Add C++20 option to asio package
2021-09-15bedops: Fix checksum for 2.4.40 (#25958)jacorvar1-1/+1
Fixes #25951
2021-09-15py-pybind11: use PythonPackage install method (#25650)Adam J. Stewart1-6/+5
2021-09-15Added LvArray 0.2.2 (#25950)Ben Corbett1-0/+1
2021-09-14Make clingo the default solver (#25502)Massimiliano Culpo2-10/+21
Modifications: - [x] Change `defaults/config.yaml` - [x] Add a fix for bootstrapping patchelf from sources if `compilers.yaml` is empty - [x] Make `SPACK_TEST_SOLVER=clingo` the default for unit-tests - [x] Fix package failures in the e4s pipeline Caveats: 1. CentOS 6 still uses the original concretizer as it can't connect to the buildcache due to issues with `ssl` (bootstrapping from sources requires a C++14 capable compiler) 1. I had to update the image tag for GitlabCI in e699f14. 1. libtool v2.4.2 has been deprecated and other packages received some update
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