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2019-08-06Overhaul numpy package (#12170)Adam J. Stewart6-134/+544
* Add numpy 1.17.0 * Overhaul numpy package * Flake8 fixes * Undefined reference fix * HeaderList and LibraryList need an arg * veclibfort has no headers * Add patch for older versions of py-numpy * Remove py-meep hack from py-numpy package * libflame: always add max arg hack flag * Fix build with GCC 4.8 * Compiler flags come from self.compiler * Only apply -std=c99 to cflags * Try to fix libflame package * Fix ATLAS build on macOS * --force-clang flag added in 3.10.3
2019-08-06fltk: fix about variable types (#12292)t-karatsu3-0/+36
* fltk: fix about variable types
2019-08-05Packages/musl (#12288)Daryl W. Grunau1-1/+20
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * fix-up musl-gcc wrapper script * address adamjstewart's comments
2019-08-05c-blosc package: Add -std=gnu99 flag for gcc (#11959)Toyohisa Kameyama2-0/+24
When building with GCC, c-blosc requires the -std=gnu99 flag. Before this patch, the build would only add -std=gnu99 for GCC when building on specific architectures; this adds -std=gnu99 in all cases when using GCC.
2019-08-05Move new packages from tutorial to builtin (#12289)Adam J. Stewart8-1/+1
* Move new packages from tutorial to builtin * Remove unicode character from docstring
2019-08-05Balay/amrex 19.08 (#12287)Satish Balay1-1/+2
* amrex: add version 19.08 * amrex: update sundials dependency for @19.08
2019-08-05openPMD-api: pre-load depend libs (#12279)Axel Huebl1-0/+23
When loading `openpmd-api` as a lib to build outside of spack or to build depending spack packages, the "CMake-PUBLIC" header-only library MPark.Variant must be available. Also, the `*Config.cmake` package must be able to find dependent libs if used.
2019-08-04Add version 19.8.0 of PLASMA (#12275)Satish Balay1-0/+1
2019-08-04Add version 2.5.1 of MAGMA released today (#12274)Satish Balay1-1/+1
2019-08-04ginkgo: add maintainers (#12273)Satish Balay1-0/+2
2019-08-04new package: py-backports-tempfile (#12261)Sinan1-0/+20
* new package: py-backports-tempfile * Update var/spack/repos/builtin/packages/py-backports-tempfile/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * remove rc version * fix single quote
2019-08-03package/py-apipkg add new version, add sha256 sums (#12260)Sinan1-2/+4
* add new version, add sha256 sums * Update var/spack/repos/builtin/packages/py-apipkg/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * add python dependencies
2019-08-03new package: py-backports-weakref (#12262)Sinan1-0/+17
* new package: py-backports-weakref * use the version at pypi.org
2019-08-03new package: py-usgs (#12263)Sinan1-0/+22
* new package: py-usgs * Update var/spack/repos/builtin/packages/py-usgs/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-usgs/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-03new package: py-requests-futures (#12264)Sinan1-0/+19
* new package: py-requests-futures * Update var/spack/repos/builtin/packages/py-requests-futures/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-03new package: py-colorlog (#12265)Sinan1-0/+18
* new package: py-colorlog * improve styling. * remove spaces
2019-08-03new package: py-colorpy (#12266)Sinan1-0/+23
* new package: py-colorpy * remove incorrect dependency
2019-08-03Add py-uritemplate package (#12259)Adam J. Stewart1-0/+17
2019-08-02Add py-earthengine-api package (#12253)Adam J. Stewart1-0/+23
2019-08-02Add py-google-api-python-client package (#12254)Adam J. Stewart1-0/+24
2019-08-02Add py-google-auth-httplib2 package (#12255)Adam J. Stewart1-0/+19
2019-08-02Add py-google-auth package (#12256)Adam J. Stewart1-0/+23
2019-08-02Add py-httplib2 package (#12257)Adam J. Stewart1-0/+17
2019-08-02Add py-pyasn1-modules package (#12258)Adam J. Stewart1-0/+21
2019-08-02Add py-cachetools package (#12252)Adam J. Stewart1-0/+19
2019-08-02Add py-pyasn1 0.4.6 (#12251)Adam J. Stewart1-3/+6
2019-08-02swig: add latest version, 4.0.0 (#12243)Reinhard Prix1-0/+1
2019-08-02slepc: update python dependencies to be in sync with petsc (#12250)Satish Balay1-1/+3
2019-08-02packages/musl (#12247)Daryl W. Grunau1-0/+43
* new musl package
2019-08-02Set default resource manager to 'none' (#12092)Marc-Andre Hermanns1-6/+7
2019-08-02minimap2, py-mappy: change dependency and build on ARM (#12127)Toyohisa Kameyama2-22/+15
* minimap2: remove py-mappy dependency and build on ARM py-mappy: Change URL and new version. * merge py-mappy to minimap2. * 1. add type in depends_on. 2. remove unneeded which.
2019-08-02Resolves #11487. (#12136)Chris Green3-2/+260
* Incorporate as a patch upstream commit https://github.com/ericniebler/range-v3/commit/0c20dbf05973368339aeae0c4e106560e2dcf76b#diff-acb9169b4ccbac494ced5140d285a015 resolving problems with `-Wno-...` options not being understood by GCC. * Incorporate as a patch upstream PR https://github.com/ericniebler/range-v3/pull/1202 fixing upstream issue https://github.com/ericniebler/range-v3/issues/1196. * Compile tests only if we actually want to run them. * Optionally compile documentation with a `+doc` variant. * Add `+examples` and `+perf` variants to avoid unnecessary compilation of components usually not required for install. * Add conditional build-only dependency on Boost when appropriate. * Install docs, examples and performance tests if built (not part of upstream build instructions). * Add @chissg as a maintainer.
2019-08-02py-flye: change to build ARM. (#12176)Toyohisa Kameyama1-0/+5
2019-08-02FAODEL: Add 1.1906.1 (#12180)Todd Kordenbrock1-16/+14
2019-08-02vdt: add simd variant (#12188)Toyohisa Kameyama1-0/+62
1. add simd variant and check target. 2. build on source directory before 0.3.8.
2019-08-02py-mpi4py: Added build argument for mpicc path (#12191)TiffanyAnn1-0/+3
* added build arguments to resolve error with Cray-MPICH * fixed indentation
2019-08-02ermod: new package (#12192)Hironori-Yamaji1-0/+28
2019-08-02parsimonator: Enable build on non x86_64 hosts. (#12194)Toyohisa Kameyama2-3/+89
2019-08-02Update c-blosc and fix building tests with icc (#12204)Glenn Johnson2-4/+13
- Update c-blosc to 1.17.0 - Add patch to build test_forksafe for versions 1.15.0 through 1.17.0 when compiled with the Intel compiler. - Remove code that turned off building the test with the Intel compiler
2019-08-02raxml: compile n non-x86 hosts. (#12208)Toyohisa Kameyama2-48/+343
1. xmmintrrin.h is included x86 only. 2. Add makefiles for non-x86 hosts. 3. mpicc in Makefiles is replaced spacks mpi compile command. 4. variant check is rewite with satisfies.
2019-08-02dialign-tx: build on ARM. (#12210)Toyohisa Kameyama1-0/+2
2019-08-02added a package butterflypack (#12222)liuyangzhuan1-0/+59
* added a package butterflypack * remove one line in the python script
2019-08-02hpcviewer: update sha sums for version 2019.07 (#12236)Mark W. Krentel1-6/+6
We (Rice HPCToolkit) issued a re-release of hpcviewer 2019.07 due to some serious bugs.
2019-08-02ginkgo: fix branch -> commit for @1.0.0. Also add variant: develtools (#12248)Satish Balay1-1/+4
This fixes error with multiple builds - when they use the cached tarball.
2019-08-02liggghts: added version 3.8.0 (#12242)dbs88421-0/+100
2019-08-02glib: fix glib dependency build fixes #9992 (#12153)Gregory Lee3-0/+44
add rpaths for glib config and py-pygobject build
2019-08-02Fixed arch setting variants. Activate cray arch automatically. (#11203)wspear1-0/+16
2019-08-02adios2: Fix backwards compatibility version logic for FindMPI (#12241)Chuck Atkins1-1/+1
2019-08-02packages: Add autotools dependencies to bolt (#12246)Tamara Dahlgren1-0/+4
Fixes #12060 (per wspear). This change is needed for minimal container environments.
2019-08-02Geant4 data packages: Set the install path name explicitly. (#12244)Patrick Gartung11-37/+32
* Geant4 data packages: Set the install path name explicitly. * Use the correct directory name for g4photonevaporation,g4radioactivedecay,g4realsurface
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