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2019-10-03Add py-flye 2.6 (#13025)Adam J. Stewart1-2/+13
2019-10-03Add EasyBuild 4.0.0 (#13024)Adam J. Stewart4-18/+41
* Add EasyBuild 4.0.0 * Update homepage, remove no longer required deps * Replace version ranges with fixed versions
2019-10-03Update ECP Data & Vis SDK packages (#13027)Chuck Atkins2-23/+22
* ecp-io-sdk: Add faodel and sort variants * ecp-viz-sdk: Re-enable catalyst, sort variants, turn on by default * ecp-io-sdk and ecp-viz-sdk: Fix dependency variants
2019-10-02Remove support for generating dotkit files (#11986)Massimiliano Culpo2-2/+1
Dotkit is being used only at a few sites and has been deprecated on new machines. This commit removes all the code that provide support for the generation of dotkit module files. A new validator named "deprecatedProperties" has been added to the jsonschema validators. It permits to prompt a warning message or exit with an error if a property that has been marked as deprecated is encountered. * Removed references to dotkit in the docs * Removed references to dotkit in setup-env-test.sh * Added a unit test for the 'deprecatedProperties' schema validator
2019-10-02added tasmanian version 7.0 to spack (#13003)Miroslav Stoyanov3-4/+52
2019-10-02New package: mapnik (#12708)Sinan1-0/+54
2019-10-02libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475)Tiziano Müller2-20/+128
* libint: switch to 2-stage build for 2.6.0+ * libint: add tune and fortran variants * cp2k: add support for libint >= 2.0 * cp2k: use pkg-config for linking libxc
2019-10-02cdhit: add zlib dependency. (#13015)Toyohisa Kameyama1-3/+7
* cdhit: add zlib dependency. * Add zlib variant.
2019-10-02denovogear: Add missing zlib depenbdency and fix open handling error. (#13017)Toyohisa Kameyama2-0/+15
2019-10-02cnpy: add zlib dependency. (#13016)Toyohisa Kameyama1-0/+2
2019-10-02Add cuda to paraview build. (#12996)Dan Lipsa1-1/+11
2019-10-02Singularity 3.4.1 still needs the makefile patch (#13008)George Hartzell1-1/+1
* Singularity 3.4.1 still needs the makefile patch * Constrain build patch to 3.4.0:3.4.1
2019-10-02new package: openldap (#12748)Sinan1-0/+92
* new package: openldap * fix mistake * remove template text * fix build error involving perl * flake8 * improvements * introduce multi valued variant for tls support * improve tls variant * overwrite build phase as opposed install * improve style
2019-10-02ants: missing zlib dependency and fix working directory in install. (#13010)Toyohisa Kameyama1-1/+6
2019-10-02breakdancer: missing ncurses dependency. (#13011)Toyohisa Kameyama1-0/+2
2019-10-02breseq: fix dependency and limit compiler version. (#13013)Toyohisa Kameyama1-1/+4
2019-10-02update py-jupyter-notebook to use the real releases (#13020)Andreas Baumbach1-13/+9
* github releases are not released versions, but from-source releases * they lack the mimification of the JS/CSS components and as such require node-js and npm, this conflicts with python@3: * this commit * drops the from-source dependencies on node-js and npm and * updates the checksums to the correct sha256 hashes of the pypi releases. The pypi-tarballs are different
2019-10-01ZFP: CMake Package (#12999)Axel Huebl4-38/+65
* ZFP: CMake Package ZFP is primarily build via CMake, which will have all install logic and configuration files generated. The 0.5.0 release did not support this yet, so we toss it. * Patch ADIOS1: ZFP 0.5.1+ support * ZFP: Expose all CMake variants
2019-10-01direnv: add info for version 2.20.0 (#13007)George Hartzell1-0/+1
2019-10-01new package: py-python-ldap (#12599)Sinan1-0/+24
* new package: py-python-ldap * fix dependency types * improvements * Update var/spack/repos/builtin/packages/py-python-ldap/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-python-ldap/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * add openldap dependency
2019-10-01New package: py-python-mapnik (#12786)Sinan1-0/+29
2019-10-01picard: add 2.20.8codeandkey1-0/+1
2019-10-01go-md2man: disable module-mode (#12985)Daryl W. Grunau1-0/+1
* go-md2man: disable module-mode * Update var/spack/repos/builtin/packages/go-md2man/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-01add singularity 3.4.1 (#12995)Eduardo Arango1-1/+3
* add singularity 3.4.1 Signed-off-by: ArangoGutierrez <eduardo@sylabs.io> * revert some changes Signed-off-by: ArangoGutierrez <eduardo@sylabs.io> * add maintainers list to pkg singularity Add @alalazo and me to the Singularity maintainers list * Update var/spack/repos/builtin/packages/singularity/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/singularity/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/singularity/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-01Dataspaces: Fix Fetch URL, Savanna Spec (#13001)Axel Huebl2-2/+2
2019-10-01GCC package: don't set CC etc. based on bin dir if it doesn't exist (#13000)Peter Scheibel1-0/+4
7bcb306 updated setup_environment in the GCC package to examine the bin/ directory to find alternatively-named instances of CC, but this failed to account for when GCC was being installed and failed when it attempted to list the not-yet-existing installation prefix. This commit updates the logic to skip this search if the bin/ directory doesn't exist.
2019-10-01libaio: fixed a condition that checks whether we are running on OS X (#12976)Massimiliano Culpo4-37/+52
* libaio: fixed a condition that checks whether we are running on OS X * libaio: simplified package by adding an explicit conflict for darwin * libaio: added information to the docstring * fio: added version 3.16, added conflict when using libaio, docstring * lvm2: conflict due to libaio dep, improved docstring, simpler install * mariadb: conflict due to libaio dep, improved docstring, version 10.4.7 * mariadb: the dependency on libaio is now conditional, removed conflict * mariadb: fixed a typo in previous commit Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * libaio: turned into a MakefilePackage
2019-10-01Kaldi package: add version 7637de7 and egs (#12911)Jimmy Tang1-0/+8
2019-10-01add new mercurial versions (#12997)Jeffrey Salmond1-1/+3
2019-10-01Update chapel to current (1.19 -> 1.20) (#12991)Christopher Edsall1-1/+2
2019-10-01ADIOS2: 2.5.0 (#12987)Axel Huebl1-0/+1
Add the latest ADIOS2 release, v2.5.0 .
2019-10-01hypre: add version 2.18.0 (#12992)Satish Balay1-0/+1
2019-10-01add adios2 dependency and configuration for newest OpenFOAM (#12993)Mark Olesen1-4/+11
2019-10-01libcerf:add CFLAGS for fujitsu compiler (#12990)noguchi-k1-0/+3
* libcerf:add CFLAGS for fujitsu compiler * fix for flake8
2019-09-30Update nano (#12980)egreen771-3/+51
2019-09-30Revert "update neovim (#12965)" (#12978)Adam J. Stewart1-2/+1
This reverts commit 86a85b7eb22ccf69489a4bfbd947da7dfedcf233.
2019-09-30petsc, slepc: add new versions - 3.12.0 (#12979)Satish Balay2-2/+8
2019-09-30Fix GCC environment variables for external installations (#12454)Seth R. Johnson1-5/+25
Unlike the compiler binary name search logic, the `setup_environment` in GCC's package assumes the compiler names are *exactly* `gcc`, `g++`, etc. In many external installations (Homebrew, Macports) the installation includes only *suffixed* versions such as `gcc-9`. This patch uses the GCC compiler search suffixes to actually locate the correct filenames for the installed compilers, allowing the Spack-generated module file to have useful definitions of CC, CXX, etc. It also allows for the possibility that the user's external installation of GCC is compiled without Fortran support, in which case the `FC` environment variables are not defined.
2019-09-30otf2: add configure args to specify compiler commands. (#12711)t-karatsu1-0/+4
* otf2: add configure args to specify compiler commands. * Modify the reference of the compile commands.
2019-09-29The perl-uri-escape package duplicates perl-uri (#12971)Glenn Johnson6-25/+6
* The perl-uri-escape package duplicates perl-uri The Perl URI::Escape module is in the Perl URI package so the Spack perl-uri-escape package is a duplicate of the perl-uri package. This PR does the following: - replace `depends_on('perl-uri-escape')` with `depends_on('perl-uri')` in packages that dependend on perl-uri-escape - add the version from perl-uri-escape to perl-uri - remove the unneeded dependency from perl-uri - remove the perl-uri-escape package * Reinstated perl-test-needs dependency Put the perl-test-needs dependency for perl-uri back in but set it to type='test'. * For tests to succeed the type must be ('build', 'test')
2019-09-28raxml: simplified recipe by removing SIMD variants (#12952)Massimiliano Culpo1-46/+12
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953)t-karatsu3-0/+86
2019-09-28vdt: simplified recipe by removing SIMD variants (#12954)Massimiliano Culpo1-55/+8
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28correct with-xxx-lib= options (#12964)Jaroslav Hron1-1/+1
2019-09-28update neovim (#12965)Patrick Schratz1-1/+2
2019-09-28bolt: add a new version, 1.0rc2 (#12966)Shintaro Iwasaki1-0/+1
2019-09-27eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970)Daryl W. Grunau1-8/+8
2019-09-27py-adios package: restrict python dependency to <=3.6.x (#12932)Ross Miller1-0/+8
The adios code (currently) won't compile against the Python 3.7 C API. This change adds a dependency on 3.6 or less.
2019-09-27Tau package: turn off unsupported variants by default on OSX (#12890)Kevin Huck1-5/+11
2019-09-27New package: libibumad (#12886)G-Ragghianti1-0/+27
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