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2024-09-11fixesproto: add xextproto dep (#46325)Harmen Stoppels1-0/+1
needed according to pc file
2024-09-11py-fluidfft and co: add new packages (#46236)Pierre Augier7-0/+214
* Add new packages: py-fluidfft and co * py-fluidfft: add few contrains (version dependencies)
2024-09-11CUDA: support Grace Hopper 9.0a compute capability (#45540)Adam J. Stewart6-27/+24
* CUDA: support Grace Hopper 9.0a compute capability * Fix other packages * Add type annotations * Support ancient Python versions * isort * spec -> self.spec Co-authored-by: Andrew W Elble <aweits@rit.edu> * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: Andrew W Elble <aweits@rit.edu> Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2024-09-11CDO: add patch for missing algorithm header (#45692)Jannek Squar3-0/+59
* add cdo patch for missing algorithm header * add patch for 2.2.2:2.3.0 Signed-off-by: Jannek <squar@informatik.uni-hamburg.de> * Add conflict of old cdo with new gcc * Update var/spack/repos/builtin/packages/cdo/add_algorithm_header_222.patch Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * Adjust patch hash * Update var/spack/repos/builtin/packages/cdo/package.py fix copy-paste-error on hash Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> --------- Signed-off-by: Jannek <squar@informatik.uni-hamburg.de> Co-authored-by: Jannek <squar@informatik.uni-hamburg.de> Co-authored-by: Try2Code <stark.dreamdetective@gmail.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-11OpenCV: add v4.8-4.10 (#46223)Adam J. Stewart1-4/+10
2024-09-11cp2k: add v2024.3 (#46297)Rocco Meli1-0/+1
2024-09-11nvhpc: add 'compiler' tag to the override (#46301)Massimiliano Culpo1-1/+1
fixes #46295 A proper solution would be a tag directive that accumulates tags with the ones defined in base classes. For the time being, rewrite them explicitly. Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-11boost package: fix Windows build (#43732)James Smillie2-26/+75
* Boost:Adjust bootstrapping/b2 options as needed for Windows (the bootstrapping phase sufficiently differs between Windows/Unix that it is handled entirely within its own branch). * Boost: Paths in user-config.jam should be POSIX, including on Windows * Python: `.libs` for the Python package should return link libraries on Windows. The libraries are also stored in a different directory.
2024-09-10Bump up the version for ROCm-6.2.0 (#45701)afzpatel58-100/+544
* initial update for rocm 6.2 * fix typo in rocprofiler-register * update rocm-device-libs * add patch to use clang 18 for roctracer-dev * add updates for rocm-opencl and rocm-validation-suite * add hipify-clang patch * update remaining packages to 6.2 * update hipblaslt mivisionx patches * update rocm-tensile to 6.2.0 * add hipsparselt changes for 6.2 * add rocm-openmp-extras patch * add build-time test for rocprofiler-register * update flang-legacy support for 6.2 * simplify version range * update boost dependency in rpp --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-09-10SIRIUS: add v7.6.1 (#46296)Taillefumier Mathieu1-0/+1
bug fix update for sirius
2024-09-10perl-bio-ensembl-io: new package (#44509)Teague Sterling1-0/+47
* Adding the perl-bio-db-bigfile package * Adding perl-bio-ensembl-io package * Update package.py * Update package.py * Update package.py * Update package.py * Updating dependent package handling Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Updating dependent package handling Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Reverting variants Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Rename package.py to package.py * Update package.py * Update package.py * Removing unneeded dependencies Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Updated from testing by @ebiarnie Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Updated from testing by @ebiarnie Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Fixing depends Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Fix styles Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Update package.py --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-10fast-float: new package (#46137)Pranav Sivaraman1-0/+36
* fast-float: new package * fast-float: add test dependency * fast-float: fix doctest dependency type * fast-float: convert deps to tuple * fast-float: add v6.1.5 and v6.1.6 * fast-float: patch older versions to use find_package(doctest)
2024-09-10py-your: Changed software pull location (#46201)Tony Weaver1-3/+5
* py-your: new package Spack package recipe for YOUR, Your Unified Reader. YOUR processes pulsar data in different formats. Output below from spack install py-your spack install py-your ==> Installing py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x [83/83] ==> No binary for py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x found: installing from source ==> Fetching https://github.com/thepetabyteproject/your/archive/refs/tags/0.6.7.tar.gz ==> No patches needed for py-your ==> py-your: Executing phase: 'install' ==> py-your: Successfully installed py-your-0.6.7-djfzsn2lutp24ik6wrk6tjx5f7hil76x Stage: 1.43s. Install: 0.99s. Post-install: 0.12s. Total: 3.12s * Removed setup_run_environment After some testing, both spack load and module load for the package will include the bin directory generated by py-your as well as the path to the version of python the package was built with, without the need for the setup_run_environment function. I removed that function (Although, like Tamara I thought it would be necessary based on other package setups I used as a basis for this package). Note: I also updated the required version of py-astropy from py-astropy@4.0: to @py-astropy@6.1.0: In my test builds, the install was picking up version py-astropy@4.0.1.post1 and numpy1.26. However when I tried to run some of the code I was getting errors about py-astropy making numpy calls that are now removed. The newer version of py-astropy corrects these. Ideally this would be handled in the py-astropy package to make sure numpy isn't too new * Changed software pull location The original package pulled a tagged release version from GitHub. That tagged version was created in 2022 and has not been updated since. It no longer runs because newer versions of numpy have removed deprecation warnings for several of their calls. The main branch for this repository has addressed these numpy issues as well as some other important fixes but no new release has been generated. Because of this and the apparent minimal development that now appears to be going on, it is probably best to always pull from the main branch * [@spackbot] updating style on behalf of aweaver1fandm * py-your: Changed software pull location 1. Restored original URL and version (0.6.7) as requested 2. Updated py-numpy dependency versions to be constrained based on the version of your. Because of numpy deprecations related to your version 0.6.7 need to ensure that the numpy version used is not 1.24 or greater because the depracations were removed starting with that version
2024-09-10Add additional cuda-toolkit location variable used by py-torch (#46245)Robert Underwood1-0/+1
superceds #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-10perl-bioperl: add v1.6.924, v1.7.8, deprecate v1.007002, refactor ↵Teague Sterling1-71/+65
dependeicies, update url (#46213) * perl-bioperl: add v1.6.924 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * fix style Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: add v1.6.924, v1.7.2, deprecate v1.007002, refactor dependencies Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: add v1.7.8 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: update url Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: cleanup version urls Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * remove v1.7.2 --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-10r: do not create dir in setup_dependent_package (#46282)Harmen Stoppels1-5/+0
2024-09-10boost: Refactor header-only install and add missing compiled libraries (#46281)Mikael Simberg1-31/+23
2024-09-10cmake: remove last occurrences of std_cmake_args globals (#46288)Harmen Stoppels4-4/+12
2024-09-09gptune: new test API (#45383)AcriusWinter1-67/+132
* gptune: new test API * gptune: cleanup; finish API changes; separate unrelated test parts * gptune: standalone test cleanup with timeout constraints * gptune: ensure stand-alone test bash failures terminate; enable in CI * gptune: add directory to terminate_bash_failures * gptune/stand-alone tests: use satisifes for checking variants --------- Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-09-09makedepf90: new package (#45816)Philipp Edelmann1-0/+24
* makedepf90: new package * reorder versions and dependencies
2024-09-09numactl: Add versions 2.0.16-2.0.18 (#46150)David Collins3-1/+31
* Add numactl 2.0.16-2.0.18 * Create link-with-latomic-if-needed-v2.0.16.patch Add a link to libatomic, if needed, for numactl v2.0.16. * Add some missing patches to v2.0.16 * Create numactl-2.0.18-syscall-NR-ppc64.patch In short, we need numactl to set __NR_set_mempolicy_home_node on ppc64, if it's not already defined. * Apply a necessary patch for v2.0.18 on PPC64 * Add libatomic patch for v2.0.16
2024-09-09py-poxy: add new package (#46214)Pranav Sivaraman1-0/+35
* py-poxy: add new package * py-poxy: depends on misk >= 0.8.1
2024-09-09darshan-runtime: fix JOBID determination (#46148)Kevin Kuriakose1-4/+4
2024-09-09Add new package py-fluiddyn (#46235)Pierre Augier1-0/+42
2024-09-09pika: Add conflict with fmt 11 and newer (#46280)Mikael Simberg1-0/+2
2024-09-09perl-graphviz: add graphviz dependency (#46268)Teague Sterling1-0/+1
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-09PyTorch: unpin pybind11 dependency (#46266)Adam J. Stewart1-6/+6
2024-09-09nekrs: add v23.0, add new build system (#45992)snehring1-23/+51
2024-09-09intel-pin: add up to v3.31 (#46185)Eric Berquist1-0/+20
2024-09-09charliecloud: fix libsquashfuse dependency type (#46189)Paul Ferrell1-3/+3
Should have been a link depenedency, not a build dependency.
2024-09-09xsdk: add amrex variant (#46190)Satish Balay1-6/+3
and remove compiler conditionals [as amrex conflict with clang no longer exists since #22967]
2024-09-09namd: variant updates (#45825)AMD Toolchain Support1-2/+24
* Add missing variant, already used in recipe (avxtiles) * Add memopt variant Co-authored-by: viveshar <vivek.sharma2@amd.com>
2024-09-09assimp: add v5.4.3, enable testing (#46267)Wouter Deconinck1-8/+18
2024-09-09wayland-protocols: add v1.37 (#46269)Wouter Deconinck1-0/+1
2024-09-09py-vector: add v1.5.1 (#46271)Wouter Deconinck1-2/+6
2024-09-09protobuf: patch @3.22:3.24.3 when ^abseil-cpp@20240116: (#46273)Wouter Deconinck1-0/+16
2024-09-09(py-)onnx: add v1.16.2; onnx: enable testing (#46274)Wouter Deconinck2-5/+12
2024-09-09lammps: add 20240829 and 20230802.4 releases (#46131)Richard Berger1-6/+41
2024-09-09xrootd: add v5.7.1 (#46270)Wouter Deconinck1-0/+1
2024-09-08Add package py-transonic (#46234)Pierre Augier1-0/+28
2024-09-07Add patch vfile_cassert.patch for ecflow@5.11.4 (#46095)Dom Heinzeller2-0/+11
2024-09-07[py-langsmith] added version 0.1.81 (#46259)Jen Herting1-1/+4
2024-09-07py-httpcore: add v1.0.5 (#46123)Jen Herting1-8/+17
* py-httpcore: Added new version * [py-httpcore] - added version 0.18.0 - restructured dependencies as everything has a when and type/when ordering was all over the place * [py-httpcore] ordered dependencies in the order listed in v1.0.5 pyproject.toml --------- Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-06[py-lpips] new package (#46256)Jen Herting1-0/+24
2024-09-06[py-torch-fidelity] New package (#46257)Jen Herting1-0/+33
* [py-torch-fidelity] New package * [py-torch-fidelity] add patch to fix missing requirements.txt
2024-09-06Sz3 fix (#46263)Robert Underwood1-1/+1
* Updated version of sz3 Supercedes #46128 * Add Robertu94 to maintainers fo r SZ3 --------- Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06New package: py-monai (#46140)Jen Herting1-0/+29
* New package: py-monai * Fixed linked issues with py-monai * [py-monai] removed extra line * [py-monai] - New version 1.3.2 - ran black - update copyright * [py-monai] added license * [py-monai] - moved build only dependencies - specified newer python requirements for newer versions --------- Co-authored-by: vehrc <vehrc@rit.edu>
2024-09-06libfabric: Add versions v1.22.0 and v1.21.1 (#46188)Kyle Gerheiser1-0/+2
* Add libfabric v1.22.0 and v1.21.1 * Fix whitespace
2024-09-06GEOS: add v3.13.0 (#46261)Adam J. Stewart1-2/+4
2024-09-06Updated version of sz3 (#46246)Robert Underwood1-0/+1
Supercedes #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
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