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* perl-bio-searchio-hmmer: new package at 1.7.3
* perl-bio-searchio-hmmer: add dependencies
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Add additionally required dependencies to WarpX that are needed
for transformations in RZ geometry with spectral (PSATD) solvers.
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* change homepage to readthedocs
* update cctools version to 7.1.5
* change http to https
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* libspatialite
* flake8
* Added proper version constrain
* Update var/spack/repos/builtin/packages/libspatialite/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/libspatialite/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* libsecret
* Update package.py
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
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Otherwise, if I run `xenv` after `spack load py-xenv` it fails with:
```
Traceback (most recent call last):
File "/home/vavolkl/spack/opt/spack/linux-centos7-broadwell/gcc-8.3.0/py-xenv-develop_2018-12-20-lqbxakapsepqo5w3sjhhokj5o7c5jei2/bin/xenv", line 6, in <module>
from pkg_resources import load_entry_point
ModuleNotFoundError: No module named 'pkg_resources'
```
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* [gaudi] fixes and patches
* Update var/spack/repos/builtin/packages/gaudi/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/gaudi/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [gaudi] add older versions and fold +tests into +optional
* [gaudi] set run environment
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* ecFlow added UI & GUI flag with new version
* Fix1
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Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
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Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
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Update package.py with the latest release [ISAAC v1.5.0].
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* pocl: add version 1.5
* update clang version
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By default, Spack chooses 1.0rc2 instead of 1.0 though 1.0 is the stable and
newer release. We manually mark the version 1.0 as preferred.
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Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
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* grass
* Update var/spack/repos/builtin/packages/grass/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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We can control the shared/static build of CMake and the default in
Spack is to build shared libraries. The old, uncontrolled default
of this package is a static build.
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See:
https://sylabs.io/guides/3.5/user-guide/quick_start.html#install-system-dependencies
for pkg-config and libseccomp
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* Revise description of patch variant.
* Add qmcpack variant. Apply QE-to-QMCPACK wave function converter patch.
* Clean-up, document, and re-organize.
* ELPA patches did not nead when=`+patch` variant.
* Need to be more precise here with QE version numbers.
* satisfies seems to be necessary here in order to get correct behaviour.
* Buglet with zlib link line.
* Update var/spack/repos/builtin/packages/quantum-espresso/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/quantum-espresso/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Fix for QE-to-QMCPACK wave function converter w.r.t. QE 6.3. Also adjust comments to reflect changes in code.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* [fastjet] initial commit
* [fastjet] remove beta versions
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* [delphes] initial commit
* [delphes] formatting fixes
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Open MPI will detect and link against GPFS if it is present
on the system. This variant allows this to be disabled, even
if GPFS is present.
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* tbl2asn: new package at 20200301
* tbl2asn: remove unused url
* tbl2asn: use spack decompression, fix permissions
* tbl2asn: change version
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* mt-metis: New package.
* variant to 1 line.
* delete useless lines.
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