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2017-10-29Changed from setting C compiler to setting C++ compiler (#6011)mmwolf1-2/+2
2017-10-29dealii: remove bzip2 dependency for newer versions (#6022)Denis Davydov1-5/+10
2017-10-28r-iranges: changed url to git and added versioned dependency on r (#5971)Yifan Zhu1-2/+3
2017-10-28r-geomorph and other r fixes (#5961)Audrey Thoma3-0/+53
2017-10-28r-e1071: Add list_url. (#5986)lingnanyuan1-0/+1
2017-10-28likwid: Update checksum (#6007)Michael Kuhn1-1/+1
2017-10-28r-organismdbi: new package (#5997)Yifan Zhu1-0/+50
2017-10-28r-aldex2: Create new package. (#6015)lingnanyuan1-0/+51
2017-10-28legion: add v17.10.0 (#6019)Christoph Junghans1-0/+2
2017-10-28fixing abyss (#5973)Audrey Thoma1-1/+4
2017-10-27Bugfix: from_list_url(). (#5780)Sergey Kosukhin1-0/+49
This fixes a bug in from_list_url where it was referring to a method which no longer exists. This also adds a test for the from_list_url function.
2017-10-27libaec: add v1.0.2 and generic url (#6017)Christoph Junghans1-3/+4
2017-10-27Byobu: new package (#5974)Matthias Diener1-0/+37
2017-10-27ecp-proxy-apps: add more package (#6003)Christoph Junghans1-1/+3
2017-10-27SWFFT: initial commit (#5953)Christoph Junghans1-0/+48
* SWFFT: initial commit * swfft: fix build target * swfft: add v1.0 * Update package.py
2017-10-27comd: add v1.1 (#5994)Christoph Junghans1-6/+6
* comd: add v1.1 * Update package.py * remove serial variant, now ~mpi * Update package.py
2017-10-27r-graph: Create new package. (#5958)lingnanyuan1-0/+37
2017-10-27r-category: Create new package. (#5959)lingnanyuan1-0/+46
2017-10-27r-methodss3: Create new package. (#5960)lingnanyuan1-0/+43
2017-10-27r-oo: Create new package. (#5962)lingnanyuan1-0/+43
2017-10-27r-utils: Create new package. (#5964)lingnanyuan1-0/+38
2017-10-27r-pfam-db: Create new package. (#5965)lingnanyuan1-0/+38
2017-10-27r-oligoclasses: Create new package. (#5966)lingnanyuan1-0/+50
2017-10-27r-interactivedisplaybase: created new package (#5967)Yifan Zhu1-0/+41
2017-10-27r-annotationforge: Create new package. (#5968)lingnanyuan1-0/+46
2017-10-27r-gostats: Create new package. (#5969)lingnanyuan1-0/+46
2017-10-27r-mcmcglmm: new package (#5970)Audrey Thoma2-0/+77
2017-10-27r-annotationhub: created new package (#5972)Yifan Zhu1-0/+51
2017-10-27gnuplot: add 5.2.0 and 5.0.7 (#5979)Denis Davydov1-0/+2
2017-10-27r-deseq2: Create new package. (#5981)lingnanyuan1-0/+53
2017-10-27r-agdex: Create new package. (#5983)lingnanyuan1-0/+39
2017-10-27r-agilp: Create new package. (#5984)lingnanyuan1-0/+36
2017-10-27r-aims: Create new package. (#5987)lingnanyuan1-0/+42
2017-10-27Add info for go@1.9.2 (#5989)George Hartzell1-0/+1
The go team released 1.9.2 which includes fixes for some things that 1.9.1 broke: > ... include fixes to the compiler, linker, runtime, documentation, go command, and the crypto/x509, database/sql, log, and net/smtp packages. They include a fix to a bug introduced in Go 1.9.1 and Go 1.8.4 that broke "go get" of non-Git repositories under certain conditions.
2017-10-27r-annotationfilter: created new package (#5995)Yifan Zhu1-0/+42
2017-10-27r-protgenerics: created new package (#5998)Yifan Zhu1-0/+37
2017-10-26ecp-proxy-apps: add dependencies (#5999)Abhinav Bhatele1-1/+6
2017-10-26miniamr: bump to v1.4.0 (#5975)Christoph Junghans1-12/+8
2017-10-26Exodus: skip the -G "Unix Makefiles" part (#5906)Ondřej Čertík2-29/+16
* Exodus: skip the -G "Unix Makefiles" part The problem is that spack passes -G "Unix Makefiles" into cmake, which normally works. But in the Exodus package, it is being passed into a bash wrapper script. In there, the $@ then loses the information about "Unix Makefiles" being just one argument, and in effect passes -G Unix Makefiles into the cmake (without quotes), and so cmake only sees -G Unix, and then fails. This is a known problem with bash with no simple solutions. As a workaround, this patch skips the first two arguments, i.e., -G and "Unix Makefiles". This makes it work. Fixes #5895. * Port exodusii to cmake The cmake options were taken from the cmake-exodus bash script and ported to spack directly. * Use variant forwarding to forward the 'mpi' Now instead of spack install exodusii~mpi^netcdf~mpi^hdf5~mpi one can just use spack install exodusii~mpi
2017-10-26minife: version bump to v2.1.0 (#5985)Christoph Junghans1-21/+6
2017-10-26Laghos: new package (#5956)Abhinav Bhatele2-0/+64
2017-10-26sw4lite: fix build errors and add variants (#5944)Abhinav Bhatele1-4/+42
* sw4lite: fix build errors and add variants * sw4lite: change linking against blas and lapack * change order of blas and lapack * satisfy flake8 requirements * Update package.py
2017-10-26Customization of the Paraview module file to its nonstandard directory ↵Jon Rood1-0/+12
structure (#5799) * Add the custom paraview lib directory structure to the library paths in the paraview module file. * Fixing flake8 issues. * Checking if lib64 exists for paraview module file generation, else use lib. * Fixing more flake8 problems I introduced.
2017-10-26flang: fixed llvm dep (#5948)Christoph Junghans1-3/+9
* flang: fixed llvm dep * add support for llvm-5 * Update package.py * Update package.py
2017-10-26Add option to install clang python bindings to llvm (#5774)Johann Klähn1-0/+7
2017-10-25Make clang use libc++ by default (#5943)Ondřej Čertík1-1/+4
Since LLVM 3.9 Clang can use the libc++ library by default using the CLANG_DEFAULT_CXX_STDLIB cmake configuration variable, without having to specify the -stdlib=libc++ option on the clang++ command line. This commit makes clang++ use libc++ by default for LLVM 3.9 and later if the libcxx variant is on. Fixes #5942.
2017-10-25adding miniTri miniapp (#5935)mmwolf1-0/+63
2017-10-25boost: remove duplicate patch (#5934)Omar Padron2-55/+2
2017-10-25tweak opencv version (#5623)Jimmy Tang1-1/+1
2017-10-25Update for 'netcdf'. (#5819)Sergey Kosukhin1-82/+135