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2023-04-26py-mypy: add 1.2.0 (#37224)Manuela Kuhn1-0/+1
2023-04-26py-flake8: add 6.0.0 and update dependencies (#37222)Manuela Kuhn3-0/+9
2023-04-26r-afex: add v1.2-1 (#37188)Alec Scott1-0/+1
2023-04-26r-argparse: add v2.2.2 (#37189)Alec Scott1-0/+1
2023-04-26r-bit: add v4.0.5 (#37190)Alec Scott1-0/+1
2023-04-26r-loo: add v2.6.0 (#37205)Alec Scott1-1/+3
* r-loo: add v2.6.0 * Split r dependency from other deps to align with common r package style
2023-04-26r-bookdown: add v0.33 (#37191)Alec Scott1-0/+3
* r-bookdown: add v0.33 * Add r@3.5.0: dependency to package
2023-04-26r-compositions: add v2.0-6 (#37192)Alec Scott1-0/+2
* r-compositions: add v2.0-6 * Split r dependecies from other r packages to match common format
2023-04-26r-convevol: add v2.0.0 (#37193)Alec Scott1-0/+1
2023-04-26r-desolve: add v1.35 (#37195)Alec Scott1-0/+1
2023-04-26r-fastmap: add v1.1.1 (#37196)Alec Scott1-0/+1
2023-04-26r-formatr: add v1.14 (#37197)Alec Scott1-0/+1
2023-04-26r-ggvis: add v0.4.8 (#37198)Alec Scott1-0/+1
2023-04-26r-glmnet: add v4.1-7 (#37199)Alec Scott1-0/+2
* r-glmnet: add v4.1-7 * Split r dependency from other deps to follow common format
2023-04-26r-insight: add v0.19.1 (#37200)Alec Scott1-0/+1
2023-04-26r-interp: add v1.1-4 (#37201)Alec Scott1-0/+2
* r-interp: add v1.1-4 * split r dep from other dependencies to match common format
2023-04-26r-jomo: add v2.7-6 (#37202)Alec Scott1-0/+1
2023-04-26r-lattice: add v0.21-8 (#37204)Alec Scott1-0/+2
* r-lattice: add v0.21-8 * Enforce a higher version of R as according to cran
2023-04-26r-magic: add v1.6-1 (#37206)Alec Scott1-0/+1
2023-04-26r-maptools: add v1.1-6 (#37207)Alec Scott1-0/+1
2023-04-26r-meta: add v6.2-1 (#37208)Alec Scott1-0/+1
2023-04-26spdk: add a new package (#35520)H. Joe Lee1-0/+81
* spdk: add a new package * chore: fix formatting and style * fix: add rdma-core dependency * fix: remove spdk < 23.01 versions per @soumagne review * spdk: add 22.01.1 version * spdk: address @soumagne reviews * spdk: fix fio audit failure * spdk: fix fio version and remove debugging info
2023-04-27scitokens-cpp: depends_on pkgconfig (#37168)Wouter Deconinck1-0/+1
A missing dependency, showing up as: ```console #24 1113.1 3 errors found in build log: #24 1113.1 20 -- Check for working CXX compiler: /opt/spack/lib/spack/env/gcc/g++ #24 1113.1 - skipped #24 1113.1 21 -- Detecting CXX compile features #24 1113.1 22 -- Detecting CXX compile features - done #24 1113.1 23 -- Found CURL: /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/curl- #24 1113.1 7.85.0-ca5zznsdkp2hwbnikha6sgqzcpuw74sc/lib/libcurl.so (found versio #24 1113.1 n "7.85.0") #24 1113.1 24 -- Found UUID : /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/util #24 1113.1 -linux-uuid-2.38.1-45xrjgjjauvev5qarwji7xgmlnhqlzkh/lib/libuuid.so #24 1113.1 25 -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) #24 1113.1 >> 26 CMake Error at /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake #24 1113.1 -3.24.3-6doi3daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/Fi #24 1113.1 ndPkgConfig.cmake:663 (message): #24 1113.1 27 pkg-config tool not found #24 1113.1 28 Call Stack (most recent call first): #24 1113.1 29 /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake-3.24.3-6doi3 #24 1113.1 daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/FindPkgConfig.c #24 1113.1 make:829 (_pkg_check_modules_internal) #24 1113.1 30 CMakeLists.txt:39 (pkg_check_modules) #24 1113.1 31 #24 1113.1 32 ``` Ref: https://github.com/scitokens/scitokens-cpp/blob/v1.0.0/CMakeLists.txt#L32
2023-04-26py-ipyrad (#37160)Trevor [LAS]1-0/+49
* Adding py-ipyrad for testing * py-ipyrad: placating flake8 * py-ipyrad: adding version 0.9.90, fixing hard coded path. * py-ipyrad: use join_path instead of hard coded linux path Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipyrad: Removing unneeded dependencies * py-ipyrad: Readded future (see ipyrad setup.py) * py-ipyrad: Switch to an anchored link in the docs Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipyrad: Removed patch decorator --------- Co-authored-by: snehring <snehring@iastate.edu> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-26rocksdb: add 8.1.1 (#37169)Michael Kuhn1-0/+1
2023-04-26libbson, mongo-c-driver: add 1.23.3 (#37175)Michael Kuhn2-0/+3
2023-04-26esmf: add v8.4.2 (#37183)Gerhard Theurich1-28/+7
2023-04-26genrich: add v0.6.1 (#37184)Alec Scott1-0/+1
2023-04-26openwsman: add v2.7.2 (#37186)Alec Scott1-0/+1
2023-04-26shortstack: add v4.0.1 (#37187)Alec Scott1-0/+1
2023-04-26abyss: add v2.3.5 (#37209)Alec Scott1-0/+1
2023-04-26advancecomp: add v2.5 (#37210)Alec Scott1-0/+1
2023-04-26barrnap: add v0.9 (#37212)Alec Scott1-0/+1
2023-04-26check: add v0.15.2 (#37216)Alec Scott1-0/+1
2023-04-26bowtie: add v1.3.1 (#37213)Alec Scott1-0/+1
2023-04-26faiss: add v1.7.4 (#37217)Alec Scott1-0/+1
2023-04-26nanoflann: add v1.4.3 (#37218)Alec Scott1-0/+1
2023-04-26pestpp: add v5.2.3 (#37219)Alec Scott1-0/+1
2023-04-26rinetd: add v0.73 (#37220)Alec Scott1-0/+1
2023-04-26specfem3d-globe: add v8.0.0 (#37221)Alec Scott1-0/+1
2023-04-26py-lightly: add v1.4.3 (#37178)Adam J. Stewart1-0/+1
2023-04-26py-sphinx: add v6.2.1 (#37177)Adam J. Stewart1-0/+1
2023-04-26py-wesanderson: add new package (#37182)Manuela Kuhn1-0/+17
2023-04-26py-tensorflow: add v2.11–2.12 (#36263)Adam J. Stewart2-58/+186
2023-04-26flecsi: add 2.2.0 release, cleanup (#37158)Richard Berger1-100/+117
* flecsi: add 2.2.0 release, cleanup * flecsi: deprecate 1.x versions * flecsi: add missing 1.4.1 release * flecsi: add missing 2.0.0 release
2023-04-25elfutils package: fix +debuginfod installation issue (#36758)Thomas Madlener2-2/+14
* elfutils cannot build against libarchive@3.62+iconv * elfutils needs libmicrohttpd version 0.9.50 or older * elfutils: explicitly depend on pkg-config * libmicrohttpd: Add several new versions
2023-04-25New: py-ax-platform; Update: py-botorch, py-gpytorch, py-linear-operator, ↵Benjamin Meyers7-12/+85
py-pyro-ppl, py-typeguard (#37143)
2023-04-25gmp: Add patch for MacOS M1/M2 machines to fix segfault (#37166)Alec Scott2-0/+524
* Add patch for MacOS M1/M2 machines to fix segfault when using gmp * Update var/spack/repos/builtin/packages/gmp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Restrict patch to v6.2.1 * Update var/spack/repos/builtin/packages/gmp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-25spla: version 1.5.5 (#37173)Simon Frasch1-0/+6
2023-04-25Narrow patch diff context for zziplib package (#29236)Austin McCartney1-3/+1
The patch for the zziplib package applied for version 0.13.69 and earlier includes a reference to Creative Commons Attribution-NonCommercial-ShareAlike 2.0 Generic license, which causes Flexera's ~expensive perl script~ FlexNet Code Insights open source license and compliance tool to flag Spack as a non-commercial product. This patch narrows the diff context in the patch to exclude this text. The semantics of the patch file are unchanged.
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