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2022-08-31bdw-gc: add v8.2.2 (#32453)Ivan Maidanski1-1/+2
2022-08-30py-gpytorch: add v1.9.0 (#32445)Adam J. Stewart2-2/+29
2022-08-30py-kornia: add v0.6.7 (#32447)Adam J. Stewart1-0/+1
2022-08-30New package: py-mkdocstrings-python (#32421)Ryan Marcellino1-0/+21
2022-08-30added STAT 4.2.0 and updated deps (#32385)Gregory Lee3-3/+13
* added STAT 4.2.0 and updated deps * launchmon package fix and style fixes * launchmon package fix * Update var/spack/repos/builtin/packages/launchmon/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libatomic_ops: add v7.6.14 (#32418)Ivan Maidanski1-1/+2
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libxml2: fix building with nvhpc (#32440)Harmen Stoppels2-36/+1
2022-08-30root: new bugfix version 6.26.06 (#32230)Wouter Deconinck1-0/+13
2022-08-30oprnmx: fix to build with Fujitsu compiler. (#32389)Toyohisa Kameyama1-1/+1
2022-08-30coreutils: add support for external find (#32414)Olivier Cessenat1-0/+10
2022-08-30hipsycl: fix building on OSX. Patch boost to be backward-compatible. (#31311)David M. Rogers1-3/+7
Co-authored-by: frobnitzem <frobnitzem@users.noreply.github.com>
2022-08-30scorep: modify configure flags for Cray platforms (#32201)luker1-2/+4
2022-08-30visit: actually set the dev env for plugins again (#32427)Olivier Cessenat1-1/+4
2022-08-30esmf: update package for cce (cray) compiler (#32433)Jim Edwards2-4/+27
2022-08-29Initial commit for freesurfer package (#32395)robgics1-0/+40
* Initial commit for freesurfer package * Add myself as maintainer * Change URLs to https and move url function to proper place.
2022-08-29snphylo: update to new version (#32425)snehring1-2/+5
2022-08-29Switched LBANN to using an explicit variant to enable unit testing (#32429)Brian Van Essen1-4/+6
support rather than relying on the spack install --test root option, because it doesn't play nice in environments.
2022-08-29dealii:: fixed application of stdcxx variant (#32413)Luca Heltai1-0/+5
* Fixed imposition of stdcxx. * Fixed style.
2022-08-29celeritas: new version 0.1.1 (#32412)Seth R. Johnson1-0/+1
2022-08-29gdk-pixbuf: new bugfix version 2.42.9 (#32420)Wouter Deconinck1-0/+1
No changes of note. Just bugfixes. Full diff at https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/compare/2.42.6...2.42.9?from_project_id=1548
2022-08-28New package: py-mkdocstrings (#32417)Ryan Marcellino1-0/+25
2022-08-28New package: py-mkdocs-jupyter (#32416)Ryan Marcellino1-0/+27
2022-08-27libxml2: add new versions (#32394)Sergey Kosukhin1-0/+10
* libxml2: add new versions * libxml2: apply patch preventing SIGFPE
2022-08-26py-radiant-mlhub: add v0.5 (#32406)Adam J. Stewart4-10/+29
2022-08-26add sra-tools and NCBI-VDT packages (#32403)downloadico2-0/+50
* ncbi-vdb: add ncbi-vdb package to spack ncbi-vdb provides the interface to the NCBI VDB * sra-tools: add sra-tools to spack
2022-08-26py-sphinx-rtd-theme: add version 1.0.0 (#32379)Richard Berger1-1/+5
2022-08-26[py-pybedtools] added version 0.9.0 (#32401)Jen Herting1-15/+14
2022-08-26New packages: roary plus 5 new perl-* (#32217)dlkuehn9-12/+210
* New package: roary
2022-08-26SDK: Option to disable fortran support. (#32319)kwryankrattiger1-6/+9
This option was requested to support MacOS systems that do not have fortran installed.
2022-08-26New package: py-mkdocs-material (#32387)Ryan Marcellino1-0/+27
2022-08-26New package: py-mkdocs-autorefs (#32386)Ryan Marcellino1-0/+21
2022-08-26Add pic variant to bacio (#32388)Dom Heinzeller1-0/+7
* Add pic variant to bacio * Fix black style error
2022-08-26add eztrace 2.0 release (#32350)François Trahay1-1/+1
* [EZTrace] Version uptate to 2.0 * Update var/spack/repos/builtin/packages/eztrace/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-26calculate make_jobs in ninja (#32384)Tom Scogland1-2/+4
This is in case ninja's setup_dependent_package is called before its module is initialized by build_environment
2022-08-25libzmq: add patch for gcc-12; conflict for older gcc-11 versions (#32381)Wouter Deconinck1-2/+9
Per #32214, the existing patch `92b2c...` for `gcc@11:` only applies cleanly for `libzmq@4.3.3:4.3.4`. This PR adds a conflict for earlier versions, as they cannot be patched due to different context. For `gcc@11`, this leaves the most recent two versions available (a satisfactory compromise). For `gcc@12`, however, there is another existing conflict that makes these most recent two versions unavailable. This PR adds an upstream patch for the single most recent version that allows compilation with `gcc@12` for that most recent version. Starting point: - `gcc@11` concretizes on all versions, attempts to apply patch on `@4.2.3:4.3.4`, and only succeeds to apply patch on `@4.3.3:4.3.4`, - `gcc@12` concretizes on `@:4.3.1` (and `@master`), attempts to apply patch on `@4.2.3:4.3.1`, fails to apply patch on all. Ending point: - `gcc@11` concretizes on `@4.3.3:4.3.4` (and `@master`), attempts and succeeds to apply patch on `@4.3.3:4.3.4`, - `gcc@12` concretizes on `@4.3.4` (and `@master`), attempts and succeeds to apply patch on `@4.3.4`. Verified with environment build: ```yaml spack: specs: - libzmq@4.3.4%gcc@12.1.0 - libzmq@4.3.4%gcc@11.3.0 - libzmq@4.3.3%gcc@11.3.0 view: false ``` which returns the following: ```console 16:14:47 wdconinc@menelaos ~/git/spack (libzmq-patch-gcc12 *+$%=) $ spack install --fresh ==> Installing environment libzmq [+] /opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libmd-1.0.4-egpgd6eoaqtsl5fja2iwsl6gyc4o32p5 [+] /opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libsodium-1.0.18-af3rsfnvck6anxf7eeog3f2bph44tjia [+] /opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/pkgconf-1.8.0-z5of2hj2c6ygd3kxr4cwv7u7t42sxair [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libmd-1.0.4-tec234gco2sd7n52dkwbrad43sdhaw4o [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libsodium-1.0.18-uljf675u3yrn5c7fdjdpa5c7qnnkynke [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/pkgconf-1.8.0-l4hzc2g4pnn7dwyttphmxivt3xghvpoq [+] /opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libbsd-0.11.5-fi3ri64moy45ksr4sf5pcwd6k23dsa4o [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libbsd-0.11.5-2matmm7im7oygrr77k7wznttv4rbupfz ==> Installing libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr ==> No binary for libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/c5/c593001a89f5a85dd2ddf564805deb860e02471171b3f204944857336295c3e5.tar.gz ==> Fetching https://mirror.spack.io/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239 ==> Fetching https://github.com/zeromq/libzmq/pull/4334.patch?full_index=1 ==> Applied patch https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1 ==> Applied patch https://github.com/zeromq/libzmq/pull/4334.patch?full_index=1 ==> libzmq: Executing phase: 'autoreconf' ==> libzmq: Executing phase: 'configure' ==> libzmq: Executing phase: 'build' ==> libzmq: Executing phase: 'install' ==> libzmq: Successfully installed libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr Fetch: 0.61s. Build: 1m 31.57s. Total: 1m 32.18s. [+] /opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr ==> Installing libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz ==> No binary for libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz found: installing from source ==> Fetching https://mirror.spack.io/_source-cache/archive/9d/9d9285db37ae942ed0780c016da87060497877af45094ff9e1a1ca736e3875a2.tar.gz ==> Using cached archive: /home/wdconinc/.spack/cache/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239 ==> Applied patch https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1 ==> libzmq: Executing phase: 'autoreconf' ==> libzmq: Executing phase: 'configure' ==> libzmq: Executing phase: 'build' ==> libzmq: Executing phase: 'install' ==> libzmq: Successfully installed libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz Fetch: 0.93s. Build: 11.55s. Total: 12.48s. [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz ==> Installing libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h ==> No binary for libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h found: installing from source ==> Using cached archive: /home/wdconinc/.spack/cache/_source-cache/archive/c5/c593001a89f5a85dd2ddf564805deb860e02471171b3f204944857336295c3e5.tar.gz ==> Using cached archive: /home/wdconinc/.spack/cache/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239 ==> Applied patch https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1 ==> libzmq: Executing phase: 'autoreconf' ==> libzmq: Executing phase: 'configure' ==> libzmq: Executing phase: 'build' ==> libzmq: Executing phase: 'install' ==> libzmq: Successfully installed libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h Fetch: 0.01s. Build: 10.77s. Total: 10.78s. [+] /opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h ```
2022-08-25py-pytorch-lightning: add v1.7.3 (#32383)Adam J. Stewart1-0/+1
2022-08-25phylip: adding workarounds for gcc10+ (#32376)snehring1-0/+16
* phylip: adding workarounds for gcc10+ * phylip: switch to spec.satisfies
2022-08-25zig: add v0.9.1 (#32380)Massimiliano Culpo1-1/+13
2022-08-25charliecloud: add versions 0.28 and 0.29 (#32378)Richard Berger1-1/+3
2022-08-25New package: py-mkdocs (#32363)Ryan Marcellino1-0/+30
2022-08-25fixed cp2k libcp2k.pc (#32349)AMD Toolchain Support1-10/+11
Co-authored-by: Prasanthi <pdonthir@amd.com>
2022-08-25new packages: r-cmdstanr and cmdstan (#32364)Glenn Johnson2-0/+117
2022-08-25new package: r-glmgampoi (#32366)Glenn Johnson1-0/+29
* new package: r-glmgampoi * Remove duplicate depends_on directive
2022-08-25new packages: r-scdblfinder and dependencies (#32367)Glenn Johnson4-0/+134
- r-bluster - r-metapod - r-scran
2022-08-25[ycsb] fixes build process and installation of YCSB (#32213)Matthieu Dorier1-15/+39
* [ycsb] fixes build process and installation of YCSB * [ycsb] fixing style * [ycsb] removed extra newline
2022-08-25New package: glab (#32251)Wileam Y. Phan1-0/+23
2022-08-25ddt: Initial commit (#32338)robgics1-0/+33
* ddt: Initial commit * ddt: Minor change to license date to appease the CI gods * Get rid of unattractive extra line * Switch to sha256 instead of md5
2022-08-25Adding e3sm-kernels to Spack (#32341)Robert Pavel1-0/+57
* Initial Draft of E3SM-Kernels Spackage Initial draft of E3SM-Kernels. Currently no support for nested_loops due to build system limitations * Style Check and Fixed gfortran Check Fixed style issues and changed gnu toolchain check to a gfortran check due to hybrid compilers (e.g. clang+gfortran) * Fixed Style Issues
2022-08-25lammps: added build dependency to py-setuptools (#32351)Lucas Frérot1-0/+1
LAMMPS' setup.py uses setuptools as of lammps/lammps@2ed8e5cf022
2022-08-25Add patch for missing template instantiation in pika 0.7.0 on macOS (#32370)Mikael Simberg1-0/+7
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-04 23:38:52 +0000