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2020-06-07py-gast: add version 0.3.3 (#16945)Sinan1-0/+2
* py-gast: add version 0.3.3 * add python version constraints Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06Add rpy2@3.0.4 (#16924)iarspider1-5/+12
* Add rpy2@3.0.4 * Style fixes * Update package.py * Proper Python version requirement
2020-06-06ffr: fix mpi programs to use mpi compiler wrapper. (#16948)Toyohisa Kameyama1-3/+12
2020-06-06[prmon] add package (#16949)vvolkl1-0/+27
2020-06-06mongo-c-driver: Add 1.16.2 (#16956)Michael Kuhn2-10/+116
This also updates libbson to the corresponding version and adds a few missing older versions.
2020-06-06added CTRE package (#16964)Matthieu Dorier1-0/+25
2020-06-06gcc: Fix error 'size of array is negative' (#16969)John Jolly4-3/+183
gcc 9.3.0 and glibc 2.31 (found in the base install of Ubuntu 20.04) cause the gcc package to error during build with the error: "size of array 'assertion_failed__####' is negative" Previous to this fix, the error was resolved for v8.1.0 <= gcc <= v9.2.0 via two patches. This fix backports those patches for v5.3.0 <= gcc <= v7.4.0 Potentially these patches need to be backported to versions of gcc before v5.3.0, but other compile issues need to be resolved for earlier versions of gcc first. Fixes #16968
2020-06-06intel-tbb: Fix for #16938 add custom libs method (#16972)Tom Payerle1-6/+12
* intel-tbb: Fix for #16938 add custom libs method Override the libs method to look for libraries of form libtbb* (instead of inherited which looks for libintel-tbb*) * Fixing pre-existing flake8 issues
2020-06-06Add new package: py-louie (#16983)darmac1-0/+21
2020-06-06Add new package: lxc (#16984)darmac1-0/+33
2020-06-06py-mysqlclient: relax dependency constraint, add new versions (#16985)Sinan1-4/+5
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06ensure xla is turned off (#16974)Sinan1-0/+7
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06py-astunparse: add version 1.6.3 (#16946)Sinan1-0/+1
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06protobuf: support aarch64 @2.5.0 (#16862)darmac2-3/+149
* protobuf: support aarch64 @2.5.0 * refine cmake args * fix patch name
2020-06-06Update package for MVAPICH2 2.3.4 release (#16960)Nithin Senthil Kumar1-1/+2
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-06-06iegenlib: add build dependencies for automake and libtool (#16980)John Jolly1-2/+4
2020-06-05py-flake8: add version 2.8.2 (#16959)Andrew Gaspar3-6/+14
* py-flake8: add version 3.8.2 * This version depends on different versions of py-pycodestyle and py-pyflakes * When built for python@:3.7, this depends on the py-importlib-metadata backport library * py-pycodestyle: add version 2.6.0 * py-pyflakes: add version 2.2.0
2020-06-05xrootd: add version 4.12.1 (#16966)Amjad Kotobi1-0/+1
2020-06-05New package: py-asteval (#16976)Sinan1-0/+19
2020-06-05pkgconf: Add 1.7.3Michael Kuhn1-0/+1
2020-06-05cajita: got merged in cabana (#16971)Christoph Junghans2-30/+0
2020-06-05cmake: add linker option for VerifyFortranC when using Fujitsu compiler. ↵Tomoki, Karatsu2-0/+14
(#16963)
2020-06-05cmake: modify FindMPI.cmake to treat Fujitsu MPI correctly (#16864)Tomoki, Karatsu2-9/+6
2020-06-05suite-sparse: change the condition to add C11 flag. (#16859)Tomoki, Karatsu1-1/+1
2020-06-04add erlang version 23.0 (#16961)eugeneswalker1-0/+1
2020-06-04Rust v1.44.0 (#16957)Andrew Gaspar1-10/+17
* libgit2 v1.0.1 * Rust 1.44.0 * Fix flake8
2020-06-04libgit2 v1.0.1 (#16952)Andrew Gaspar1-0/+1
2020-06-04sz: patch in ctag optionality from robertu94/sz 3637a87f986c (#16953)eugeneswalker2-0/+44
2020-06-04pass hwloc to configure via useropt; use lib/ or lib64/ as appropriate for ↵eugeneswalker2-0/+37
libunwind (#16941)
2020-06-04Fix obsolete references to wx package (#16944)Adam J. Stewart2-2/+2
2020-06-04NumPy: add 1.18.5 (#16943)Adam J. Stewart1-1/+2
2020-06-03Add matplotlib 3.1.0 (#16921)iarspider1-0/+1
2020-06-03Add py-jupyter-core@4.6.1 (#16922)iarspider1-0/+1
2020-06-03Trilinos: add Stratimikos package (#16925)Seth R. Johnson1-0/+9
Stratimikos is an optional dependency for our project. It depends on Thyra, and thyra has subpackages that should be enabled based on tpetra/epetra/epetraext.
2020-06-03+ Add opppy-0_1_3 (#16926)Mathew Cleveland1-2/+4
+ Update maintainers for OPPPY package + remove "run" requirement for setuptools and sphynx Co-authored-by: Cleveland <cleveland@lanl.gov>
2020-06-03Add pytest@5.3.4 (#16927)iarspider1-1/+2
Dropping atomicwrites dependency: https://github.com/pytest-dev/pytest/issues/6147
2020-06-03mpfr: update hash for 4.0.2 patch (#16937)Seth R. Johnson1-1/+1
2020-06-03py-openpyxl: add 3.0.3 (#16940)Adam J. Stewart1-2/+6
2020-06-03IPython: fix setuptools dependency (#16915)Adam J. Stewart1-2/+4
* IPython: fix setuptools dependency * Remove extra colon
2020-06-03Gnuplot fix 16928 (#16929)Tom Payerle1-1/+1
* gnuplot: Fix for #16928 Dependency for --with-wx flag mistyped (should be wxwidgets) * Revert "gnuplot: Fix for #16928" This reverts commit 2b85814e5ccf5c9b2c70c7959994e89c18fdc3d8. * gnuplot: Fix for #16928 Dependency spec for --with-wx flag mistyped (should be wxwidgets, not wx)
2020-06-03update darshan-runtime & darshan-util versions (#16934)shanedsnyder2-0/+4
* update darshan-runtime & darshan-util versions includes up through the current release, 3.2.1 * remove pre-releases, not needed in spack
2020-06-03patch lambda capture issue for @1.1906.1, fixed in upstream faodel@master ↵eugeneswalker2-0/+27
(#16935)
2020-06-03Feature: add option to create view by copying/relocating files (#16480)Greg Becker1-2/+2
* add subcommand `spack view copy/relocate` * update bash completions * add copy/relocate commands to view tests * allow copied views to be removed
2020-06-03amber: updated dependency constraint on cuda (#16919)dmorone1-1/+1
Fix message 'amber requires cuda version :10.1.243, but spec asked for 10.2.89'
2020-06-03openssh: added v8.3p1 and v8.1p1 (#16917)Amjad Kotobi1-0/+2
2020-06-03git: added v2.27.0 (#16918)Amjad Kotobi1-1/+5
2020-06-02mummer4: new package at 4.0.0-beta2 (#16907)Justin S1-0/+21
2020-06-02Add new package: sbml (#16898)Robert Blake1-0/+122
* Adding a module for sbml. * Adding support for all the languages. * Update var/spack/repos/builtin/packages/sbml/package.py Co-authored-by: Greg Becker <becker33@llnl.gov> * Update var/spack/repos/builtin/packages/sbml/package.py Co-authored-by: Greg Becker <becker33@llnl.gov> Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com> Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-06-02Ruby: add warning about Avira antivirus (#16882)Adam J. Stewart1-0/+4
2020-06-02alsa-lib: Add new version and python dependency. (#16905)Toyohisa Kameyama2-1/+44
Add version 1.2.2. Add conditional python dependency. Add patch for 1.1.4.1 and python.