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2024-10-04py-glmsingle: Add v1.2 (#46776)Manuela Kuhn1-0/+2
2024-10-04pika: add 0.29.0 (#46778)Mikael Simberg1-1/+4
2024-10-04clingo: fix build with Python 3.13+ (#46775)Harmen Stoppels2-0/+13
Python 3.9 deprecated `PyEval_InitThreads` and kept it as a no-op, and Python 3.13 deleted the function. The patch removes calls to it.
2024-10-04umpire: re-instate lost depend on camp ~rocm when umpire itself has ~rocm ↵Mikael Simberg1-0/+1
(#46747)
2024-10-04py-mpi4py: add v4.0.0 (#46652)Satish Balay2-4/+5
* py-mpi4py: add v4.0.0 * sensei: update mpi4py dependency build with py-mpi4py@4.0.0 due to fatal no such file or directory error * petsc4py: update license, and remove C++/Fortran dependency
2024-10-04paraview: add new v5.13.1 release (#46695)Vicente Bolea1-2/+3
2024-10-03armadillo: add v12.8.4, v14.0.2 (#46761)Wouter Deconinck1-0/+4
* armadillo: add v12.8.4, v14.0.2 * armadillo: fix git --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03duckdb: add v1.1.1, remove 0.7.1->0.8.1, update variants (#46743)Teague Sterling1-26/+45
Signed-off-by: Teague Sterling <teaguesterling@gmail.com> Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-10-03hiop: add v1.1.0 (#46764)Satish Balay1-0/+3
2024-10-03py-keras: add v3.6 (#46767)Adam J. Stewart1-3/+7
2024-10-03at-spi2-core: add v2.52.0,2.54.0 (#46769)Teague Sterling1-0/+2
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-10-03doxygen: add v1.12.0 (#46752)Wouter Deconinck1-10/+13
2024-10-03catch2: add v3.7.1 (#46759)Wouter Deconinck1-0/+1
2024-10-03Update some package homepage URLS (#46683)Niklas Bölter8-8/+8
Co-authored-by: Rocco Meli <r.meli@bluemail.ch> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03gh: add v2.58.0, drop GoBuilder (#46720)Alec Scott1-2/+1
* gh: drop GoBuilder now that GoPackage supports legacy attributes * gh: add v2.58.0
2024-10-03libxsmm: fix for aarch64 environment (#42312)m-shunji1-2/+5
Co-authored-by: inada-yoshie <inada.yoshie@fujitsu.com>
2024-10-03py-igv-notebook: new package (#46723)Ashim Mahara1-0/+24
2024-10-03apptainer: add v1.3.4 (#46730)Wouter Deconinck2-0/+2
2024-10-03Stand-alone testing: remove deprecated methods (#45752)AcriusWinter14-27/+127
* Stand-alone testing: remove deprecated methods * audit: replace deprecated test method checks for test callbacks (AcriusWinter) * install_test: replace deprecated with new test method name starts (AcriusWinter) * package_base: removed deprecated test methods (AcriusWinter) * test/package_class: remove deprecated test methods (AcriusWinter) * test/reporters: remove deprecated test methods (AcriusWinter) * reporters/extract: remove deprecated test-related methods (AcriusWinter) * py-test-callback: rename test in callbacks and output (AcriusWinter) * reporters/extract: remove deprecated expected failure output capture (AcriusWinter) * stand-alone test cleanup: f-string, remove deprecation warning, etc. (AcriusWinter) * stand-alone tests: f-string fix and remove unused imports (AcriusWinter) * package_base: finish removing the rest of deprecated run_test method (AcriusWinter) * py-test-callback: remove stand-alone test method (AcriusWinter) * package_base: remove now unused imports (AcriusWinter) * Python: test_imports replaces test (tldahlgren) * mptensor, trivial-smoke-test: replace deprecated cache_extra_test_sources method (tldahlgren) * trivial-smoke-test: replace deprecated install_test_root method (tldahlgren) * docs: update perl and scons package's test methods (tldahlgren) * builder: remove deprecated test() method (tldahlgren) * Update legion and mfem test data for stand-alone tests (tldahlgren) * py-test-callback: restore the test method * Audit/stand-alone testing: Fix and added stand-alone test audit checks - fix audit failure message for build-time test callback check - remove empty test method check during stand-alone testing - change build-time test callback check to package_properties - add test method docstring audit check and mock fail-test-audit-docstring pkg - add test method implementation audit check and mock fail-test-audit-impl pkg - add new mock packages to test_package_audits and test_test_list_all * audits: loosen docstring content constraints * Add missing test method docstring * py-test-callback: resolve builder issues * Audits: Add checks for use of deprecated stand-alone test methods; improve output for other test-related checks * Fix style issues * test_test_list_all: add new fail-test-audit-deprecated package --------- Signed-off-by: Tamara Dahlgren <dahlgren1@llnl.gov> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03py-torchaudio: add support for CUDA 12.5+ (#46746)Adam J. Stewart1-1/+6
2024-10-03ambertools: new package (#42684)Daniel Beltrán2-1/+90
* new builtin package: ambertools * fixes for the style test * yet more changes for the style test * hope this is the last fix for the style test * netlib-xblas is a dependency, it needs a depends_on("m4", type="build") * ambertools: Add new setuptool dependency, limit python to <= 3.10 (does not build with 3.11+) --------- Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-10-03vep: new package (#44522)Teague Sterling1-0/+131
* Adding the perl-bio-db-bigfile package * Adding perl-bio-ensembl package * Adding perl-bio-ensembl-variation package * Adding the perl-bio-ensembl-funcgen package * Adding perl-bio-ensembl-io package * Fixing checksums * py-uvloop: add v3.8.14, v3.9.15, v3.10.3 and dependencies * rollback * Update package.py * Update package.py * vep: add v110,v111,v112 * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Updating dependent package handling Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Updating dependent package handling Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Update package.py * Update package.py * Reverting variants Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Update package.py * Update package.py * Rename package.py to package.py * Update package.py * Update package.py * Update package.py * Fix variant installation and dependencies Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Styles Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Removing unneeded dependencies Signed-off-by: Teague Sterling <teaguesterling@gmail.com> --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com> Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2024-10-03pika: remove git dependency (#46745)Mikael Simberg1-1/+0
2024-10-03hpcviewer: add version 2024.09 (#46744)Mark W. Krentel1-1/+7
2024-10-02ospray: add v3.2.0 (and dependencies) (#46676)Wouter Deconinck5-11/+25
2024-10-02py-pyproj: add v3.7.0 (#46690)Adam J. Stewart1-10/+16
2024-10-02py-jinja2: add v3.1.4 (fix CVE) (#46668)Wouter Deconinck1-2/+13
* py-jinja2: add v3.1.4 (fix CVE) * py-jinja2: fix py-flit-core upper limit * py-jinja2: url_for_version due to lowercase jinja2
2024-10-02dcmtk: add v3.6.8 (fix CVE) (#46627)Wouter Deconinck1-4/+5
* dcmtk: add v3.6.8 (fix CVE) * dcmtk: apply tiff patch to new version too * dmctk: tiff patch when range closed since in upstream master
2024-10-03alpaka: add v0.9.0, v1.0.0, v1.1.0, v1.2.0 (#46607)Tapish Narwal1-23/+56
2024-10-03edm4hep: fix concretization by adding a when inside the conditional (#46710)Juan Miguel Carceller1-1/+1
2024-10-03yq: add v4.44.3, fix go dependency constraints (#46738)Alec Scott1-0/+5
2024-10-02mepo: add 2.1.0 (#46726)Matt Thompson1-0/+1
2024-10-02Add more ReFrame versions (#46706)Vasileios Karakasis1-0/+23
2024-10-03scc: add v3.4.0, drop generated dependencies (#46733)Alec Scott1-2/+3
2024-10-02MPICH: Add version 4.2.3 (#46718)Ken Raffenetti1-0/+1
2024-10-02hugo: add v0.135.0, switch to GoPackage (#46735)Alec Scott1-17/+27
2024-10-02lazygit: add v0.44.1 (#46736)Alec Scott1-1/+4
2024-10-02git: fix zsh shell completions (#46725)Alec Scott1-0/+5
2024-10-03glow: fix package to install completions and not source dir (#46728)Alec Scott1-5/+15
2024-10-02rclone: add v1.68.1, convert to a GoPackage (#46721)Alec Scott1-18/+7
* rclone: convert to a GoPackage * rclone: add v1.68.1
2024-10-02kubectl: add v1.31.1, convert to a GoPackage (#46722)Alec Scott1-9/+3
2024-10-02direnv: convert to GoPackage (#46724)Alec Scott1-14/+1
2024-10-02litestream: drop GoBuilder now that GoPackage is fixed (#46727)Alec Scott1-6/+4
2024-10-02restic: convert to GoPackage (#46719)Alec Scott1-14/+2
2024-10-02stdexec: Add nvhpc@24.09 version (#46714)Auriane R.1-0/+1
2024-10-02libuv-julia: Add v1.48.0 (#46705)Mosè Giordano1-0/+1
2024-10-02nghttp2: Add v1.59.0 (#46704)Mosè Giordano1-0/+1
2024-10-02fds: add 6.9.0,6.9.1 and openmp (#46717)kjrstory1-2/+9
* fds: add 6.9.0,6.9.1 and openmp * typo and style fix
2024-10-02py-rucio-clients: new package (and dependencies) (#46585)Wouter Deconinck16-7/+280
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2024-10-02ipopt: add 3.14.12 to 3.14.14, improve mumps integration (#46673)Alex Tyler Chapman2-8/+81
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