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2024-03-13expat: Add release 2.6.2 with security fixes (#43171)Sebastian Pipping1-3/+13
2024-03-14llvm-openmp: make llvm-openmp consistent with other llvm builds (#43165)Tom Scogland1-19/+25
Add current versions of the 17 and 18 releases Stop making it nearly impossible to compose this correctly with code built with gcc Build for compatibility by default like we do in every other llvm package
2024-03-13jags: add version 4.3.2 (#43166)Christopher Christofi1-0/+1
2024-03-13octopus: disable gdlib by default (#43161)Ashwin Kumar Karnad1-0/+6
2024-03-13Add iamashwin99 as a maintainer in Octopus package (#43163)Ashwin Kumar Karnad1-1/+1
2024-03-13octopus: Support new version octopus@14 (#43160)Ashwin Kumar Karnad1-2/+10
* add checksum for octopus 14 * Update dependencies for BerkeleyGW package
2024-03-13protobuf: apply centos 8 patch only to @3.4: (#43162)Martin Aumüller1-1/+1
does not apply cleanly to older versions
2024-03-13rocm-openmp-extras: Fix resource download URLs (#43147)Wileam Y. Phan1-4/+2
* rocm-openmp-extras: Fix resource download URLs * Apply review suggestions
2024-03-13py-ruff: add version 0.3.0 and deprecate the oldest version (#43069)Juan Miguel Carceller1-1/+6
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-03-13update to cdo-2.4.0 (#43071)Brian Spilner1-0/+5
2024-03-13antlr4-cpp-runtime: update dependencies (#43115)吴坎1-0/+2
* update dependencies * Update package.py
2024-03-13Update var/spack/repos/builtin/packages/ecmwf-atlas/package.py: set correct ↵Dom Heinzeller1-2/+7
ectrans/trans variant, configure tesselation variant (#43151)
2024-03-12abinit: add version 9.10.5 (#43148)downloadico1-3/+2
set the FC variable to the MPI Fortran compiler and also set the F90 variable to the same compiler for versions 9.8 and up. FC needs to be set because the configure script still uses FC.
2024-03-12unmaintained packages: add new versions (#43112)Alec Scott103-82/+165
* unmaintained packages: add new versions * Fix parallel and numactl * Revert numactl changes * rollback lua-sol2 version * Update alluxio version format
2024-03-12SEACAS: Make latest release available in spack (#43123)Greg Sjaardema1-0/+3
2024-03-12py-art: add new package (#43127)Christopher Christofi1-0/+19
2024-03-12py-lazy-loader: add new version (#43130)Christopher Christofi1-1/+4
2024-03-12ecmwf-atlas@0.36: depend on ecbuild@3.4: (#43133)Dom Heinzeller1-0/+1
2024-03-12libquo: Update default version from 1.3.1 to 1.4. (#43057)Samuel K. Gutiérrez1-1/+2
Signed-off-by: Samuel K. Gutierrez <samuel@lanl.gov>
2024-03-12Intel oneapi compilers 2023.2.4 (#43144)Andrey Perestoronin2-1/+12
* added intel-oneapi-compilers * added classics version
2024-03-12perl testing: refactor stand-alone testing into base class (#43044)Tamara Dahlgren238-1880/+4
2024-03-12gaudi: add py-yaml dependency (#43116)Valentin Volkl1-0/+1
Needed to parse job options in yaml format (https://gitlab.cern.ch/gaudi/Gaudi/-/blob/master/GaudiKernel/python/GaudiKernel/ProcessJobOptions.py#L528). In principle this is optional, but it's needed for the test 35 - GaudiKernel.pytest.nose.test_Configurables (Failed). Seems like there's no harm done in adding this as a full dependency.
2024-03-12py-psyclone and py-fparser: Add new releases (#42744)Oakley Brunt3-22/+106
* py-psyclone and py-fparser new releases added * py-fparser: add missing releases for py-psyclone * py-psyclone: actioned @adamjstewart comments * py-psyclone: removed py-pytest-pylint * py-pytest-pylint: added package @ latest version * py-pytest-pylint: reformatted * Update var/spack/repos/builtin/packages/py-psyclone/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-pytest-pylint: added build deps and runtime dep versions * py-pytest-pylint: removed version from setuptools * py-psyclone: add py-pytest-pylint test dep and alphabetize deps * Update var/spack/repos/builtin/packages/py-pytest-pylint/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-psyclone: deps ordered --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-12sleef: add v3.6 (#42978)Pierre Blanchard1-6/+5
2024-03-11py-neuralgcm: add new package (#43117)Adam J. Stewart4-0/+112
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-03-11perl-math-symbolic: add required perl-parse-recdescent dependency (#42157)Christopher Christofi1-0/+3
* perl-math-symbolic: add required perl-parse-recdescent dependency * perl-math-symbolic: add new runtime dependency
2024-03-11perl-parsetemplate: add new package (#41845)Christopher Christofi1-0/+17
* perl-parsetemplate: add new package * perl-parsetemplate: update to latest copyright date and add license
2024-03-11Fix callbacks accumulation when using mixins with builders (#43100)Massimiliano Culpo1-0/+32
fixes #43097 Before this PR the behavior of mixins used together with builders was to mask completely the callbacks defined from the class coming later in the MRO. Here we fix the behavior by accumulating all callbacks, and de-duplicating them later.
2024-03-11py-climax: add new package (#43121)Adam J. Stewart3-0/+90
2024-03-11aocl-utils: source sha has changed (#43120)Stephen Sachs1-2/+2
* aocl-utils: source sha has changed * aocl-utils: version 4.1 hash updated
2024-03-11py-onnx-opcounter: add new package (#43119)Adam J. Stewart1-0/+24
2024-03-11py-earth2mip: add new package (#43062)Adam J. Stewart45-101/+781
* py-earth2mip: add new package * Fix audit tests * Make things easier to concretize * Make things easier to concretize * Fix magics build * Fix onnx build * blacken * cmake > py-cmake * Fix onnxruntime build * onnxruntime: remove unknown cmake vars * Trick bazelisk into using Spack bazel * Different deps for main * protobuf: add v3.25.3 * Enforce upper bound on jaxlib version * py-chex: add v0.1.85 * py-dm-haiku: add v0.0.12 * py-jax: add v0.4.25 * Older jaxlib doesn't build on ppc64le either
2024-03-11fzf: add v0.47.0 (#43113)Alec Scott1-0/+1
2024-03-11updated diy/package.py to version 3.6.0 (#43101)tpeterka1-2/+3
2024-03-11geant4: new variant timemory (#43111)Wouter Deconinck1-0/+5
* geant4: new variant timemory * geant4: depends_on timemory@3.2: * geant4: fix style
2024-03-11ruby: add version 3.3.0 (#43058)downloadico1-0/+2
* ruby: add version 3.3.0 * added dependency on libyaml
2024-03-11Update TensorFlow ecosystem (#41069)Adam J. Stewart4-30/+94
2024-03-11package/qgis: add new version (#42888)Sinan2-13/+32
* package/qgis: add new version * improve Qsci.pro * improve * fix undefined symbol qsciprinter error * add import test * fix bug * add version 3.36 * [@spackbot] updating style on behalf of Sinan81 * fix long line * only run import test when +python * first attempt at stand-alone test * add TODO --------- Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com> Co-authored-by: Sinan81 <Sinan@world>
2024-03-11dla-future: Add patch for compilation with newer ROCm versions (#42348)Mikael Simberg2-0/+25
2024-03-10fix typo in dependency (#43105)Jonas Eschle1-1/+1
2024-03-10feat: add LLVM v18.1.1 (#43109)Pranav Sivaraman1-0/+1
2024-03-09proj: correct CMake arg for shared build with proj older than 7.0.0 (#43089)John W. Parent1-1/+2
* proj: correct CMake arg for shared build with proj older than 7.0.0 * Actually use new CMake arg * Update var/spack/repos/builtin/packages/proj/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-08perl-bio-eutilities and deps: new packages (#42869)Arne Becker4-0/+132
This adds Spack packages for these Perl distributons: - Bio::DB::EUtilities and its dependencies: - Bio::ASN1::EntrezGene - Bio::Cluster - Bio::Variation
2024-03-08perl-test-warn: update version, dependencies (#42901)Arne Becker1-3/+22
* perl-test-warn: new package Adds Test::Warn * Revive older version * perl-test-warn: fix URL and deprecate old version
2024-03-08perl-starman and deps: new packages (#42958)Arne Becker2-0/+66
Adds Starman and its dependencies. Installed OK with build-time tests. Added dependencies: - Starman - Starman
2024-03-08gnupg: add v2.4.5, remove deprecated versions (#43090)Massimiliano Culpo3-99/+26
Also updates dependencies: libassuan: add v2.5.7 libgcrypt: deprecate end of life versions
2024-03-08verible: Add revision v0.0-3607-g46de0f64 (#43086)Dave Keeshan1-0/+5
2024-03-08visit: link against hip when built with vtk-m+rocm (#42452)snehring1-6/+6
2024-03-08Curl package: update Windows support (#42752)John W. Parent1-9/+27
* Properly specify Curl builder interface for static vs shared curl with NMake system to ensure all built curls export expected symbols. * Symlinks curl library build artifact to more idiomatic name for FindCurl.cmake implementations and other NMake consumers.
2024-03-08Add package zfit (#42667)Jonas Eschle1-0/+82
* Add package zfit (WIP) * Add package zfit * Add package zfit * add maintainer * [@spackbot] updating style on behalf of jonas-eschle * Update package.py * enh: add extras, 0.18.1 * fix: add default * fix: typo * fix: typo * chore: cleanup arguments * chore: cleanup arguments * Update var/spack/repos/builtin/packages/py-zfit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zfit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * chore: cleanup arguments * fix: typo * Update var/spack/repos/builtin/packages/py-zfit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-zfit/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: jonas-eschle <jonas-eschle@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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