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2024-09-10Add additional cuda-toolkit location variable used by py-torch (#46245)Robert Underwood1-0/+1
superceds #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-10perl-bioperl: add v1.6.924, v1.7.8, deprecate v1.007002, refactor ↵Teague Sterling1-71/+65
dependeicies, update url (#46213) * perl-bioperl: add v1.6.924 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * fix style Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: add v1.6.924, v1.7.2, deprecate v1.007002, refactor dependencies Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: add v1.7.8 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: update url Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * perl-bioperl: cleanup version urls Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * remove v1.7.2 --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-10r: do not create dir in setup_dependent_package (#46282)Harmen Stoppels1-5/+0
2024-09-10boost: Refactor header-only install and add missing compiled libraries (#46281)Mikael Simberg1-31/+23
2024-09-10cmake: remove last occurrences of std_cmake_args globals (#46288)Harmen Stoppels4-4/+12
2024-09-09gptune: new test API (#45383)AcriusWinter1-67/+132
* gptune: new test API * gptune: cleanup; finish API changes; separate unrelated test parts * gptune: standalone test cleanup with timeout constraints * gptune: ensure stand-alone test bash failures terminate; enable in CI * gptune: add directory to terminate_bash_failures * gptune/stand-alone tests: use satisifes for checking variants --------- Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-09-09makedepf90: new package (#45816)Philipp Edelmann1-0/+24
* makedepf90: new package * reorder versions and dependencies
2024-09-09numactl: Add versions 2.0.16-2.0.18 (#46150)David Collins3-1/+31
* Add numactl 2.0.16-2.0.18 * Create link-with-latomic-if-needed-v2.0.16.patch Add a link to libatomic, if needed, for numactl v2.0.16. * Add some missing patches to v2.0.16 * Create numactl-2.0.18-syscall-NR-ppc64.patch In short, we need numactl to set __NR_set_mempolicy_home_node on ppc64, if it's not already defined. * Apply a necessary patch for v2.0.18 on PPC64 * Add libatomic patch for v2.0.16
2024-09-09py-poxy: add new package (#46214)Pranav Sivaraman1-0/+35
* py-poxy: add new package * py-poxy: depends on misk >= 0.8.1
2024-09-09darshan-runtime: fix JOBID determination (#46148)Kevin Kuriakose1-4/+4
2024-09-09Add new package py-fluiddyn (#46235)Pierre Augier1-0/+42
2024-09-09pika: Add conflict with fmt 11 and newer (#46280)Mikael Simberg1-0/+2
2024-09-09perl-graphviz: add graphviz dependency (#46268)Teague Sterling1-0/+1
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
2024-09-09PyTorch: unpin pybind11 dependency (#46266)Adam J. Stewart1-6/+6
2024-09-09nekrs: add v23.0, add new build system (#45992)snehring1-23/+51
2024-09-09intel-pin: add up to v3.31 (#46185)Eric Berquist1-0/+20
2024-09-09charliecloud: fix libsquashfuse dependency type (#46189)Paul Ferrell1-3/+3
Should have been a link depenedency, not a build dependency.
2024-09-09xsdk: add amrex variant (#46190)Satish Balay1-6/+3
and remove compiler conditionals [as amrex conflict with clang no longer exists since #22967]
2024-09-09namd: variant updates (#45825)AMD Toolchain Support1-2/+24
* Add missing variant, already used in recipe (avxtiles) * Add memopt variant Co-authored-by: viveshar <vivek.sharma2@amd.com>
2024-09-09assimp: add v5.4.3, enable testing (#46267)Wouter Deconinck1-8/+18
2024-09-09wayland-protocols: add v1.37 (#46269)Wouter Deconinck1-0/+1
2024-09-09py-vector: add v1.5.1 (#46271)Wouter Deconinck1-2/+6
2024-09-09protobuf: patch @3.22:3.24.3 when ^abseil-cpp@20240116: (#46273)Wouter Deconinck1-0/+16
2024-09-09(py-)onnx: add v1.16.2; onnx: enable testing (#46274)Wouter Deconinck2-5/+12
2024-09-09lammps: add 20240829 and 20230802.4 releases (#46131)Richard Berger1-6/+41
2024-09-09xrootd: add v5.7.1 (#46270)Wouter Deconinck1-0/+1
2024-09-08Add package py-transonic (#46234)Pierre Augier1-0/+28
2024-09-07Add patch vfile_cassert.patch for ecflow@5.11.4 (#46095)Dom Heinzeller2-0/+11
2024-09-07[py-langsmith] added version 0.1.81 (#46259)Jen Herting1-1/+4
2024-09-07py-httpcore: add v1.0.5 (#46123)Jen Herting1-8/+17
* py-httpcore: Added new version * [py-httpcore] - added version 0.18.0 - restructured dependencies as everything has a when and type/when ordering was all over the place * [py-httpcore] ordered dependencies in the order listed in v1.0.5 pyproject.toml --------- Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-09-06[py-lpips] new package (#46256)Jen Herting1-0/+24
2024-09-06[py-torch-fidelity] New package (#46257)Jen Herting1-0/+33
* [py-torch-fidelity] New package * [py-torch-fidelity] add patch to fix missing requirements.txt
2024-09-06Sz3 fix (#46263)Robert Underwood1-1/+1
* Updated version of sz3 Supercedes #46128 * Add Robertu94 to maintainers fo r SZ3 --------- Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06New package: py-monai (#46140)Jen Herting1-0/+29
* New package: py-monai * Fixed linked issues with py-monai * [py-monai] removed extra line * [py-monai] - New version 1.3.2 - ran black - update copyright * [py-monai] added license * [py-monai] - moved build only dependencies - specified newer python requirements for newer versions --------- Co-authored-by: vehrc <vehrc@rit.edu>
2024-09-06libfabric: Add versions v1.22.0 and v1.21.1 (#46188)Kyle Gerheiser1-0/+2
* Add libfabric v1.22.0 and v1.21.1 * Fix whitespace
2024-09-06GEOS: add v3.13.0 (#46261)Adam J. Stewart1-2/+4
2024-09-06Updated version of sz3 (#46246)Robert Underwood1-0/+1
Supercedes #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06Update ExaCA backend handling and add version 2.0 (#46243)Sam Reeve1-2/+29
* Add exaca 2.0 * Add kokkos/cuda/hip backend support for exaca
2024-09-06Replace `if ... in spec` with `spec.satisfies` in f* and g* packages (#46127)Auriane R.79-280/+280
* Replace if ... in spec with spec.satisfies in f* and g* packages * gromacs: ^amdfftw -> ^[virtuals=fftw-api] amdfftw * flamemaster: add virtuals lapack for the amdlibflame dependency --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-09-06py-pandas: relax build dependencies (#46229)Adam J. Stewart1-5/+5
2024-09-06py-torchgeo: zipfile-deflate64 no longer required (#46233)Adam J. Stewart1-1/+1
2024-09-06Use an HTTP git url for libpressio-opt (#46249)Robert Underwood1-1/+1
superceds #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-06sleef: add the PIC flag (#46217)Juan Miguel Carceller1-1/+4
2024-09-06pthreadpool: add the PIC flag (#46216)Juan Miguel Carceller1-0/+1
2024-09-06Bootstrap GnuPG and `file` on Windows (#41810)John W. Parent2-0/+71
Spack can now bootstrap two new dependencies on Windows: GnuPG, and file. These dependencies are modeled as a separate package, and they install a cross-compiled binary. Details on how they binaries are built are in https://github.com/spack/windows-bootstrap-resources
2024-09-06py-pybind11: add v2.13.0-v2.13.4 and new conflict (#45872)Stephen Nicholas Swatman1-0/+8
This PR adds py-pybind11 versions 2.13.0, 2.13.1, 2.13.2, 2.13.3, and 2.13.4. It also adds a new conflict between gcc 14 and pybind versions up to and including 2.13.1.
2024-09-05Require a newer version of cudnn for cupy (#46247)Robert Underwood1-1/+2
cupy 12 needs a newer version of cudnn as documented here. Supercedes #46128 Co-authored-by: Robert Underwood <runderwood@anl.gov>
2024-09-05py-contourpy: add v1.3.0 (#46225)Adam J. Stewart1-9/+23
2024-09-05expat: Add 2.6.3 with security fixes + deprecate vulnerable 2.6.2 (#46208)Sebastian Pipping1-2/+10
2024-09-05Bug fixes for building py-netcdf4 and py-ruamel-yaml-clib with ↵Dom Heinzeller2-2/+2
apple-clang@15 (#46184) * Fix compiler flags in py-netcdf4 for apple-clang@15: * Fix compiler flags in py-ruamel-yaml-clib for apple-clang@15:
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