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2023-10-16Creation of Beatnik package and associated updates to silo and cabana spack ↵Patrick Bridges3-10/+129
package (#40382) * Added initial package for building Beatnik with spack * Fixed github ID for Jason as a maintainer. * Major revision of beatnik spack package to properly support GPU spack builds with CUDA (and ROCm, though that it untested) * Marked that beatnik 1.0 will require cabana 0.6.0. We will wait for the cabana 0.6.0 release before we release beatnik * Update to beatnik package spec to compile with hipcc when +rocm * Updated spack package for cabana for version 0.6.0 and appropriate heffte dependency * Updated beatnik package to require cabana 0.6.0 * More updates to cabana and beatnik to build with cabana 0.6.0 * Finish removing BLT dependence from beatnik * More updates to beatnik package for compiling on cray systems * Updated beatnik package for new cabana package * Changes to silo package for new silo version * Fixed version specs for heffte to be able to concretize and build * Fixed spack style issues for beatnik and silo packages * More spack formatting fixes to beatnik and silo * Patrick adopting silo package as maintainer for now * Should address final style changes to beatnik package spec * Yet more style fixes. * Perhaps this is the final style fixes? :) * Minor fix to cabana package on required versions
2023-10-16Add latest versions of rlwrap (#40563)Eric Berquist1-0/+11
* Add latest versions of rlwrap * rlwrap: fix URL for v0.46.1
2023-10-16intel-oneapi-compilers: ifx is located in bin not bin/intel64 (#40561)Stephen Sachs1-1/+4
This is a fix on top of https://github.com/spack/spack/pull/40557 . Tagging @rscohn2 for review.
2023-10-16py-furo: new version (#40559)Seth R. Johnson1-0/+1
2023-10-16py-grayskull: add new package (#40293)Adam J. Stewart6-8/+111
* py-grayskull: add new package * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-10-16py-fiona: add v1.9.5 (#40497)Adam J. Stewart1-7/+18
2023-10-16py-shapely: add v2.0.2 (#40523)Adam J. Stewart1-1/+3
2023-10-16py-grpcio: cython 3 still not supported (#40537)Adam J. Stewart1-1/+1
2023-10-16py-lightning: add v2.1.0 (#40496)Adam J. Stewart1-46/+55
2023-10-16Updating patch to enable flag mcode-object-version=none (#40367)renjithravindrankannath6-30/+64
* Updating patch to add flag mcode-object-version=none when device libs is buils as part of llvm-amdgpu * Limiting patch to +rocm-device-libs variant and adding appropriate comment for the patch * Updating llvmpatch as per the mailine code Updating hsa-rocr patch as per the latest code Updating the if elif condition for the hip test src path * Updating flags for 5.5 relases and above * Updating build flags and patches
2023-10-16Fix version incompatibilities of py-pandas and py-openpyxl (#40472)Dom Heinzeller4-0/+57
* Fix version incompatibilities of py-pandas and py-openpyxl * Add variant excel for py-pandas * Add package py-pyxlsb * Add versios for py-xlsxwriter * Define excel dependencies for py-pandas 1.4, 1.5, 2.0, 2.1 * Fix variant excel in py-pandas * Add package py-odfpy, which is also a dependency for py-pandas@2.0: * Rearrange excel dependencies for py-pandas * Change url to pypi * Add missing newline to fix style in py-odfpy
2023-10-16Add nextflow 23.10.0 (#40547)Diego Alvarez S1-0/+5
2023-10-16fenics-basix: update for v0.7 (#40440)Garth N. Wells2-5/+10
* Uodate for Basix 0.7 * Version fix for nanobind dependency * Simplification * Version update and simplify dependencies * Add comment on location of pyproject.toml * Update var/spack/repos/builtin/packages/py-fenics-basix/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-16intel-oneapi-compilers: ifx uses --gcc-name & --gxx-name (#40557)Stephen Sachs1-2/+2
`ifx` uses the older syntax instead of `--gcc-toolchain`. Tested up to version 2023.2.0.
2023-10-16py-fenics-ufl: update version and add test (#40534)Garth N. Wells1-4/+15
* Update py-ufl vesion * Syntax fix * Syntax fix * Add test * Updates following comments
2023-10-16[add] py-cylc-uiserver: new recipe (#39983)Lydéric Debusschère1-0/+32
* [add] py-cylc-uiserver: new recipe * py-cylc-uiserver: remove version constraint on the dependence python * [fix] py-cylc-uiserver: add forgotten dependence py-graphql-core --------- Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr>
2023-10-15fix: flux-core needs libarchive with +iconv (#40541)Vanessasaurus1-1/+1
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2023-10-15Version update and simplify dependencies (#40543)Garth N. Wells1-2/+5
2023-10-15py-torchdata: version rename (#40522)Adam J. Stewart1-1/+1
2023-10-15Python: allow OneAPI 2024 when it's released (#40536)Adam J. Stewart1-1/+1
2023-10-15py-click: fix Python 3.6 support (#40535)Adam J. Stewart1-0/+2
2023-10-15tasmanian: patch for clang17 (#40515)Miroslav Stoyanov2-0/+104
2023-10-15mfem: add a patch for v4.6 for gcc 13, see mfem PR 3903 (#40495)Veselin Dobrev2-0/+13
2023-10-14heffte: fix rocm deps (#40514)Miroslav Stoyanov1-0/+2
2023-10-14Bug fixes in py-awscrt to fix build errors reported in #40386 (#40469)Dom Heinzeller1-0/+7
* Bug fix in var/spack/repos/builtin/packages/py-awscrt/package.py: on Linux, tell aws-crt-python to use libcrypto from spack (openssl) * Bug fix in var/spack/repos/builtin/packages/py-awscrt/package.py: add missing build dependencies cmake (for all), openssl (for linux) * Update var/spack/repos/builtin/packages/py-awscrt/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-14Add static support for proj (#40322)Alex Richert1-4/+12
* Add static-only option for proj * Update proj * update proj * Update package.py * [@spackbot] updating style on behalf of AlexanderRichert-NOAA * Update package.py * proj: Add pic and static variant support for cmake
2023-10-14py-pydicom: add 2.4.3 (#40487)Manuela Kuhn1-3/+3
2023-10-14py-pybids: add 0.16.3 (#40486)Manuela Kuhn1-1/+1
2023-10-14py-cfgv: add 3.4.0 (#40465)Manuela Kuhn1-1/+4
2023-10-14py-charset-normalizer: add 3.3.0 (#40471)Manuela Kuhn1-0/+1
2023-10-14py-click: add 8.1.7 (#40473)Manuela Kuhn1-4/+2
2023-10-14py-chardet: add 5.2.0 (#40468)Manuela Kuhn1-0/+3
2023-10-14py-certifi: add 2023.7.22 (#40445)Manuela Kuhn1-0/+1
2023-10-14py-bidskit: add 2023.9.7 (#40444)Manuela Kuhn1-0/+1
2023-10-14py-pyqt6: add 6.5.2 (#40413)Manuela Kuhn1-0/+1
2023-10-14py-python-fmask: update to latest versions (#40378)Sam Gillingham1-3/+8
* tidy and add new version * add comment about dependencies * whitespace
2023-10-14[add] py-graphene-tornado: new recipe, required by py-cylc-uiserver (#39985)Lydéric Debusschère1-0/+25
* [add] py-graphene-tornado: new recipe, required by py-cylc-uiserver * py-graphene-tornado: Taking reviewing into account * py-graphene-tornado: add type run in dependences py-jinja, py-tornado and py-werkzeug Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: LydDeb <lyderic.debusschere.tgcc@cea.fr> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-14py-urllib3: add 2.0.6 (#40207)Manuela Kuhn2-13/+40
* py-urllib3: add 2.0.5 * Add py-brotli package * Group brotli dependencies and make limits more specific * Add minimum version limits to variants * Remove python upper limit for py-brotli * Fix restrictions for py-brotli dependency * Fix py-brotli dependency * py-urllib3: add 2.0.6
2023-10-14cpr: new package (#40509)Seth R. Johnson1-0/+30
* New package: cpr * Support libcpr version 1.9 * Fix build phase for git * Update var/spack/repos/builtin/packages/cpr/package.py Co-authored-by: Alec Scott <alec@bcs.sh> * [@spackbot] updating style on behalf of sethrj --------- Co-authored-by: Alec Scott <alec@bcs.sh>
2023-10-14screen: add v4.9.1 (#40529)Harmen Stoppels1-0/+1
2023-10-14git: add 2.42 (#40528)Harmen Stoppels1-0/+2
2023-10-14libbson, mongo-c-driver: add 1.24.4 (#40518)Michael Kuhn2-9/+17
2023-10-14libfuse: add 3.16.2 (#40519)Michael Kuhn1-1/+5
2023-10-14mariadb-c-client: add 3.3.7 (#40521)Michael Kuhn1-0/+1
2023-10-14rocksdb: add 8.6.7 (#40525)Michael Kuhn1-0/+1
2023-10-14Fix pkgconfig dependencies (#40524)Michael Kuhn2-2/+2
`pkgconfig` is the correct virtual dependency.
2023-10-14glib: add 2.78.0, 2.76.6 (#40517)Michael Kuhn1-0/+2
2023-10-14sqlite: add 3.43.2 (#40520)Michael Kuhn1-0/+1
2023-10-13cairo: add shared and pic variants (#40302)Alex Richert1-0/+12
2023-10-13wayland: dot is a build dependency (#39854)Martin Aumüller1-4/+23
* wayland: dot is a build dependency otherwise this build failure happens: ../spack-src/doc/meson.build:5:6: ERROR: Program 'dot' not found or not executable * wayland: make building of documentation optional renders several dependencies optional
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