| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2020-02-15 | Add extra version of imagemagick (#14954) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of jemalloc (#14955) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of json-c (#14956) | iarspider | 1 | -1/+2 | |
| 2020-02-15 | Add extra version of libgit2 (#14957) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of libsodium (#14958) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of libsvm (#14959) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of libxkbcommon (#14961) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of nlohmann-json (#14962) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of pcre (#14963) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of pixman (#14964) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-absl-py (#14965) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-asn1crypto (#14967) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-arrow (#14966) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-astroid (#14968) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-attrs (#14969) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Flang - Support libomptarget offload to NVidia GPU (#15015) | Nichols A. Romero | 2 | -14/+93 | |
| * Modify Flang NVidia GPU variant to make use of built-in CudaPackage * Add OpenMP Offload patch if March 2019 compiler is selected. * Flang parallel build has a race condition. * llvm-flang now uses built-in CudaPackage. * Add variant for different build releases. * Fix OpenMP target offload for NVidia GPUs. * Additional commong flags that are needed with comments. * NVidia BC required for libomp target requires special treatment. Use clang built in previous step to re-compile libomptarget. | |||||
| 2020-02-15 | Add extra version of py-cython (#14974) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-coverage (#14976) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-certifi (#14977) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-backports-abc (#14978) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-decorator (#14980) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-importlib-metadata (#14983) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-ipaddress (#14984) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-ipykernel (#14985) | iarspider | 1 | -11/+12 | |
| 2020-02-15 | Add extra version of py-ipython (#14986) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-jinja2 (#14989) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | Add extra version of py-jpype1; add numpy as optional (variant) dependency ↵ | iarspider | 1 | -1/+4 | |
| (#14991) * Add extra version of py-jpype1 * Add numpy as optional (variant) dependency | |||||
| 2020-02-15 | Add extra version of py-jupyter-client (#14996) | iarspider | 1 | -0/+1 | |
| 2020-02-15 | package r-readbitmap Change jpeg dependency (#15004) | Glenn Johnson | 1 | -1/+1 | |
| This PR corrects the jpeg dependency in r-readbitmap to use the jpeg virtual dependency. | |||||
| 2020-02-15 | mafft: add 7.453 (#15006) | Justin S | 1 | -0/+1 | |
| 2020-02-15 | cloc: add version 1.84 (#15012) | Matthias Diener | 1 | -0/+1 | |
| 2020-02-15 | Add a new package: Metall (#14903) | Keita Iwabuchi | 1 | -0/+22 | |
| * Add a new package: Metall * Fix errors in metall/package.py * Update var/spack/repos/builtin/packages/metall/package.py Change to https style URL Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update in metall/package.py. Change Metall to depend on Boost always * Update in metall/package.py. Change to install Boost with the default variants * Update metall/package.py. Removed a comment Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> | |||||
| 2020-02-14 | cuda: add libxml2 as a dependency for newer versions (#14758) | Scott Wittenburg | 1 | -0/+8 | |
| 2020-02-14 | py-whichcraft: new package (#14907) | Matthias Wolf | 1 | -0/+17 | |
| * py-whichcraft: new package * address comment | |||||
| 2020-02-13 | fix env vars before install (#14575) | Sajid Ali | 1 | -0/+3 | |
| 2020-02-13 | Updated both cub and nccl versions. Fixed a bug in the cub download (#14852) | Brian Van Essen | 2 | -1/+10 | |
| url. | |||||
| 2020-02-13 | New package: r-codex (#14869) | Glenn Johnson | 2 | -0/+50 | |
| This PR adds the r-codex package. - new package: r-bsgenome-hsapiens-ucsc-hg19 | |||||
| 2020-02-13 | openblas: add variant +consistentFPCSR (#14876) | Kai Torben Ohlhus | 1 | -0/+6 | |
| Add the OpenBLAS variant `+consistentFPCSR`, by default `False`, which adds the compile definition `CONSISTENT_FPCSR=1` as documented in OpenBLAS `Makefile.rule`. | |||||
| 2020-02-13 | [rsync] Use popt and zlib (#14755) | Dr. Christian Tacke | 1 | -0/+6 | |
| popt and zlib are available as spack packages. So use them instead of building internal ones. | |||||
| 2020-02-13 | New package: r-exomedepth (#14884) | Glenn Johnson | 2 | -0/+52 | |
| This PR adds the r-exomedepth package and r-aod as a dependency. | |||||
| 2020-02-13 | New package: r-exomecopy (#14885) | Glenn Johnson | 1 | -0/+24 | |
| 2020-02-13 | New package: r-fdb-infiniummethylation-hg18 (#14890) | Glenn Johnson | 2 | -0/+43 | |
| This PR adds the r-fdb-infiniummethylation-hg18 package and the needed dependency of r-txdb-hsapiens-ucsc-hg18-knowngene. | |||||
| 2020-02-13 | Update and fix the r-rhtslib package (#14863) | Glenn Johnson | 5 | -1/+68 | |
| This PR adds an updated version to the r-rhtslib package as well as fix the build. - add patches to use compiler flags from R - add variables for bzip2 and xz dependencies - use the spack Makeconf file when building the in-tree htslib - make patchelf available to allow R to remove reference to temporary installation directory in htslib shared object - Add new version of r-rsamtools as the r-rsamtools and r-rhtlib packages are closely paired. | |||||
| 2020-02-13 | Patch silo for %clang@9 (#14892) | Seth R. Johnson | 1 | -0/+26 | |
| 2020-02-13 | Add missing dep to git. (#14895) | Alec Thomas | 1 | -0/+1 | |
| As discussed in: https://spackpm.slack.com/archives/C5VL7V81G/p1581394270058800 | |||||
| 2020-02-13 | Fix run environment (#14908) | asmaahassan90 | 1 | -2/+2 | |
| * Fix run environment Trying to install Avizo, i get "Error: NameError: name 'run_env' is not defined". Correcting it to be just "env" * fix identation | |||||
| 2020-02-13 | intel-tbb: update to new tar file names for 2020 versions (#14924) | Mark W. Krentel | 1 | -9/+16 | |
| Starting with 2020, the tar files are named v2020.0.tar.gz, v2020.1.tar.gz, etc, not 2020_U1.tar.gz. https://github.com/intel/tbb/releases The previous commit (7a10478708) fixed the checksum mismatch, but didn't update url_for_version (my bad). | |||||
| 2020-02-13 | unifyfs: remove numa dependency (#14925) | Cameron Stanavige | 1 | -11/+5 | |
| UnifyFS no longer has an option to depend on numa. This removes the numa variant, dependency, and associated conflict. This commit also - renames the `pmpi` variant to the more appropriate `auto-mount` - changes the preferred version to the most recent release | |||||
| 2020-02-13 | charmpp: add version 6.10.0, switch to https for download (#14930) | Matthias Diener | 1 | -1/+2 | |
| 2020-02-13 | byobu: add version 5.131 (#14932) | Matthias Diener | 1 | -0/+3 | |
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