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2018-09-03mpifileutils: add v0.8 (#9152)Adam Moody1-1/+3
2018-09-03msgpack-c, snappy: explicitly depend on googletest (#9167)Matthias Wolf3-2/+22
2018-09-03Fix two dependencies with silo. (#9153)David Wells1-0/+2
1. I presently get errors of the sort ==> Error: KeyError: 'No spec with name mpi in silo@4.10.2%gcc@8.1.0+fortran+mpi [...] $HOME/spack/var/spack/repos/builtin/packages/silo/package.py:84, in configure_args: 81 'FCFLAGS={0}'.format(self.compiler.pic_flag)] 82 83 if '+mpi' in self.spec: >> 84 config_args.append('CC=%s' % self.spec['mpi'].mpicc) 85 config_args.append('CXX=%s' % self.spec['mpi'].mpicxx) 86 config_args.append('FC=%s' % self.spec['mpi'].mpifc) without the extra explicit MPI dependency. 2. Silo uses zlib, so we should explicitly depend on it.
2018-09-01Vim: add version 8.1.0338 (#9155)Adam J. Stewart1-1/+6
2018-09-01GDAL: add version 2.3.1 (#9156)Adam J. Stewart1-7/+13
2018-08-31SUNDIALS: add new versions, update hashes, and apply clang fix (#9115)Cody Balos1-14/+30
Added SUNDIALS 3.1.2 and 4.0.0-dev.1 versions and relevant dependencies (3.1.2 requires CMake 2.8.12). Updated all versions to use sha256 hashes. Addressed issue specific to clang compiler on macOS.
2018-08-31py-filelock: new package (#9136)Francesco Di Natale1-0/+45
* Addition of py-filelock and first page of versions. * Addition of setup.py patch for setuptools. * flake8 failure fixes. * Reduced url declaration to a single line. * Correction to py-filelock to use distutils.
2018-08-31openblas@0.3.3: new version (#9143)Geoffrey Oxberry1-0/+1
2018-08-31libpng package: add version (#9142)rice311-0/+1
2018-08-31singularity: new versionLevi Baber1-0/+1
2018-08-29Intel prefixes (#7469)Michael Sternberg6-845/+154
Consolidate prefix calculation logic for intel packages into the IntelPackage class. Add documentation on installing Intel packages with Spack an (alternatively) adding them as external packages in Spack.
2018-08-29binutils: add variant 'nls' for native language support (#9124)Mark W. Krentel1-6/+12
Add variant 'nls' for native language support with default True. The default inside binutils was always on, but this gives a way of turning it off, if desired. Adjust the dependencies. Flex is never used for a one-time build. Bison and m4 should not be needed, except that prior to rev 2.30, gold did not include its generated files, so bison is needed when +gold. Drop configure option --enable-interwork. This option does not exist.
2018-08-29Add MDB driver support to GDAL (#8614)Adam J. Stewart5-5/+216
2018-08-29New package: NEST Simulator (#9092)Andreas Baumbach1-0/+170
2018-08-29ROSS package: fix build error and add v7.0.0 (#9128)Abhinav Bhatele1-4/+6
2018-08-29Adds a package for optional-lite header-only library (#9117)Andrew Gaspar1-0/+45
2018-08-29flecsi: fix build (#9129)Christoph Junghans1-0/+1
2018-08-29Adds a package for span-lite header-only library (#9118)Andrew Gaspar1-0/+43
2018-08-29hdf5@1.10.3: new version (#9121)Geoffrey Oxberry1-0/+1
2018-08-29ipopt@3.12.10: new version (#9120)Geoffrey Oxberry1-0/+1
2018-08-29New package: channelflow (#9111)Massimiliano Culpo1-0/+104
2018-08-29added star 2.6.1a (#9103)Douglas Duckworth1-1/+2
2018-08-29go: Update to 1.11 (#9101)Michael Kuhn1-0/+1
2018-08-29Add string-view-lite package for header only library (#9125)Andrew Gaspar1-0/+43
2018-08-29gasnet:version bump (#9127)Christoph Junghans1-1/+2
2018-08-28atk package: hotfix #9099 (#9102)Jannek Squar1-0/+6
Adds explicit python3 dependency for meson
2018-08-28Java updates: new versions, classpath, and JAVA_HOME (#8613)Adam J. Stewart6-46/+194
This PR includes the following changes: * Added JDK 10 * Changed the JDK version numbers according to the consensus reached in #2284 * Added spec['java'].home and spec['java'].libs, similar to #3367 (JDK and IcedTea) * Added a check to prevent people from installing JDK on macOS * Set CLASSPATH for packages depending on Java (JDK and IcedTea) * Add TODO for extending virtual packages (not currently possible) * Add TODO for adding Java dependents to views * Add TODO for packages which extend multiple packages (e.g. Java and Python)
2018-08-28perl-star-fusion package: update latest version (#9104)Douglas Duckworth1-1/+1
2018-08-27dyninst: add dependency on libiberty (#8806)Sasha Nícolas1-0/+1
* Adding dependency of libiberty to Dyninst package configuration. * Now it depends on libiberty package and not binutils.
2018-08-26Add line in trilinos/stk configuration to enable stk_ngp package. (#9082)Alan Williams1-0/+1
The Trilinos/stk configuration is pretty Nalu specific right now (and is acknowledged as such in a comment in package.py), and this commit enables a module that Nalu will be needing.
2018-08-26r-goseq: new package (#8939)Levi Baber1-0/+43
* r-goseq: new package * r-goseq: git not url * r-goseq: adding packages needed at runtime * r-goseq: package type * r-goseq: dep types * r-goseq: one more
2018-08-26braker: add new version 2.1.0 (#8946)lingnanyuan1-3/+5
* braker: add new version 2.1.0 * Set verison in descending order. * Update URL. * url * braker: change url format.
2018-08-26patch for OF.com@18.06 to correctly find KAHIP (#8982)TZ2-0/+18
- OpenFOAM-v1806/wmake/scripts/have_kahip must check $KAHIP_ARCH_PATH instead of $METIS_ARCH_PATH to detect the KAHIB library - use a local patch file until the issue is hopefully fixed upstream
2018-08-25Update to latest version of pytest and dependencies (#9087)Adam J. Stewart13-35/+110
* Update to latest version of pytest and dependencies * Fix bug in installation tests
2018-08-25bugfix: 'submodules' attribute should imply git fetchTodd Gamblin1-0/+1
- 'submodules' wasn't properly declared as an optional attribute for git fetcher - add it and add a test.
2018-08-24new package: GSL - C++ Guideline Support Library (#9091)Hadrien G1-0/+51
Since "GSL" is a highly overloaded acronym, the package name is "cppgsl".
2018-08-24Update the pocl package (#9090)Hadrien G1-7/+20
* Update the pocl package * Use url_for_version * Clarify hwloc version requirements * Apply hwloc dependency suggestion
2018-08-24Add new CLHEP releases and move to sha256 hashes (#9089)Hadrien G1-19/+20
2018-08-24range-v3 package (#9093)Hadrien G1-0/+59
* Add first version of a Range-v3 package * Add C++ standard variant to range-v3 package
2018-08-23htop: add version 2.2.0 (#9086)Matthias Diener1-0/+1
2018-08-23bison: add new version (#9085)Matthias Diener1-0/+1
2018-08-23lammps: add v20180822 (#9081)Christoph Junghans1-0/+1
2018-08-23add cdo releases 1.9.4 and 1.9.5 (#9079)Brian Spilner1-0/+2
2018-08-23mvapich2: Use rdma-core for mrail and nemesis*ib* fabrics (#9072)Michael Kuhn1-1/+6
2018-08-22Open mpi add v3.1.2 (#9078)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Open MPI 3.1.2 built and tested Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-22libquo: Packaging updates. (#9076)Sam Gutiérrez1-6/+13
* libquo: Packaging updates. This commit accomplishes a few things: * Changes distribution fetch source * Removes a deprecated version (1.2.9) * Changes dependencies based on version type * Adds a custom autoreconf stage when using the 'develop' version, omitting this step when building from a distribution * Reintroduce v1.2.9.
2018-08-22glib: Add 2.56.2 (#9071)Michael Kuhn1-3/+4
This should finally fix build failures on RHEL6-based distributions. Also fix the patch to apply to the correct versions and distributions.
2018-08-22libfabric: Add develop version option. (#9074)Sam Gutiérrez1-0/+12
Add develop version option to libfabric, conditionally bringing in additional build dependencies: m4, autoconf, automake, libtool.
2018-08-22leveldb: Fix header installation (#9069)Michael Kuhn1-1/+1
leveldb headers are typically included via <leveldb/c.h>. The migration to install_tree in 73c978ddd99973e29f2ba42078b10455c1de5ca8 caused the headers to end up in prefix.include, which breaks existing applications.
2018-08-22r-genefilter: new version (#9063)Levi Baber1-1/+3
* r-genefilter: new version * r-genefilter: fix version in dep
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