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2022-09-10new packages: py-arm-pyart and dependencies (#32579)Glenn Johnson5-0/+187
* new packages: py-arm-pyart and dependencies - py-arm-pyart - py-cylp - rsl * Update var/spack/repos/builtin/packages/py-cylp/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix dependencies - xarray is not optional - pandas is needed - pylab is needed - new package, py-pylab-sdk - setuptools is needed at run time * Patch for import of StringIO * Update var/spack/repos/builtin/packages/py-arm-pyart/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix call to `StringIO` in patch Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-09py-session-info: add new package (#32564)Jen Herting1-0/+20
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-09-09py-anndata: add new package (#32563)Jen Herting1-0/+28
Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-09-09New package: py-python-bioformats (#32561)Jen Herting1-0/+24
* [py-python-bioformats] New package * [py-python-bioformats] Added version 4.0.0 * [py-python-bioformats] Added types * [py-python-bioformats] setuptools is build only * [py-python-bioformats] fixup import * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-09-09py-umap-learn: add new package (#32562)Jen Herting1-0/+25
Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-09-08Match protobuf to py-protobuf version (#32491)Brian Van Essen2-3/+25
* Fixed the py-protobuf recipe so that when cpp support is require so that it uses the same major and minor version range for the protobuf package. * Fixed the range bound for the 3.x py-protobuf packages. Added mappings for 4.x py-protobuf packages to 3.x protobuf packages. Removed a hash for v21.1 protobuf and replaced with v3.21.1 to keep a standard versioning convention. Note that while Google has started releasing both 3.x.y and a tag that dropped the leading 3. so it is just x.y. This provides the appearance of a new major version, but really is just a new minor version. These packages still report versions as 3.x.y, so switching to versions and hashes with that convention. * Simplified constraints based on reviewer comments. * Fixed flake8 errors * Update var/spack/repos/builtin/packages/py-protobuf/package.py * Fixed constraints on v2. versions and addressed Flake8 comments. * Fixed flake8 * Fixed range dependencies for version 2.x * Update var/spack/repos/builtin/packages/py-protobuf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fixed version ranges to skip unknown versions. * Fixed the dependencies on protobuf to solve weird build issues. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-08CMakePackage: allow custom CMAKE_PREFIX_PATH entries (#32547)Peter Scheibel3-0/+45
* define `cmake_prefix_paths` property for packages add to CMake arguments via CMakePackage Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-09-08libmonitor: add version 2022.09.02 (#32525)Mark W. Krentel1-0/+1
2022-09-08py-cython: add 0.29.32 (#32574)Michael Kuhn1-2/+3
2022-09-08meson: add v0.63.2 (#32575)Michael Kuhn1-0/+1
2022-09-08New package: py-pytesseract (#30765)Jen Herting1-0/+19
* Versions added for each dep, but I think I'll need to remove them * py-tesseract now builds and will import in python * Fixed flake style error as raised by pipeline * changed to proper python dependency * added pil as a dependency * Fixed flake style errors * [py-pytesseract] py-pillow and py-wheel are redundant * [py-pytesseract] - fixed spelling - removed unneeded dependency * [py-pytesseract] update import Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
2022-09-08ucx: add 1.13.1 release (#32556)Howard Pritchard1-0/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov> Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-09-07llvm: add 15.0.0 (#32536)Satish Balay1-2/+2
2022-09-06Upgrade py-kosh to 2022-08-10 version. (#32541)Robert Blake1-0/+1
2022-09-06quantum-espresso: add cuda support (#31869)Laura Bellentani1-12/+43
2022-09-06py-tensorflow: add v2.7.4, v2.8.3, v2.9.2 (#32500)Adam J. Stewart1-0/+3
* py-tensorflow: add v2.7.4 * py-tensorflow: add v2.8.3 * py-tensorflow: add v2.9.2
2022-09-06update libflame for work with crayCC, craycc, ... (#32533)luker1-1/+1
update libflame for work with crayCC, craycc, crayftn compiler wrappers. These lightweight compiler drivers do not add the `-L<lib_path>` like the CC/cc/ftn compiler drivers do. I've made a slight change to add the lib directories.
2022-09-04rocthrust: add amdgpu_target and spack build test (#31203)Cory Bloor1-2/+14
This change adds support for building the rocthrust tests and adds the `amdgpu_target` variant to the `rocthrust` package. - [x] rocthrust: add amdgpu_target and spack build test - [x] Drop numactl as it is not a direct dependency
2022-09-02Apply hip workaround for raja-framework (#32469)Tom Scogland3-2/+29
* add workaround for broken behavior in HIP Hip has a longstanding cmake issue where they calculate include paths incorrectly, this works around it for raja and adds an explicit rocprim dependency. * propagate openmp requirement and workaround to camp * refactor and include umpire * propagate openmp option to camp in umpire and use main camp for main and develop raja and umpire * bump camp to new patch release
2022-09-02[CURL] New version. (#32481)Timothy Brown1-0/+1
Adding a new version of curl. This addresses issue [9081](https://github.com/curl/curl/issues/9081).
2022-09-02tree: add 2.0.3 (#32463)Alex Hedges1-1/+8
Fix GCC compiler warnings due to not using C99 mode CC should be overriden with Spack's value, and the other flags needed to be copied from the Makefile.
2022-09-01meson: add maintainer (#32460)Adam J. Stewart3-1/+5
2022-09-01py-pytorch-lightning: add v1.7.4 (#32464)Adam J. Stewart1-0/+1
2022-09-01Upgrade version from 0.7.0-beta to 0.8.0-beta. (#32442)H. Joe Lee1-2/+2
The version 0.8.0-beta is released.
2022-09-01Add: py-sphinx-design (#32482)Axel Huebl1-0/+21
* Add: py-sphinx-design Needed for #32480
2022-09-01Backport fix for buliding vtk-m diy with GCC 11 (#32465)kwryankrattiger2-0/+27
2022-09-01root: apply 6.26 COMPILE_DEFINITIONS patch unconditionally (#32472)Graeme A Stewart1-2/+3
This bug isn't per-se tied to the root7 variant and should be applied always for these ROOT releases
2022-09-01amrex: add v22.09 (#32477)Weiqun Zhang1-1/+2
2022-09-01use bash for autoreconf (#32466)Jordan Ogas1-1/+1
2022-09-01Port package sanity unit tests to audits (#32405)Massimiliano Culpo2-8/+9
2022-08-31meson: add 0.63.1 (#32441)Michael Kuhn1-0/+1
2022-08-31perl-bignum: Adding perl module (#31590)marcost28-0/+139
2022-08-31py-black: add v22.8.0 (#32468)Adam J. Stewart1-6/+7
2022-08-31gdk-pixbuf: only build tests when requested (#32452)Wouter Deconinck1-0/+3
The building of tests is optional [as of 2.42.9](https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/commit/801eef111df624f4377baed9a90c94b6a2d4340c). This applies this option in the build. The reason the option was added was to deal with test build failures in sandboxed environments and with certain glibc versions (caused by glib gresources). For example, with the latest version glibc and in the latest version of docker these tests [cannot be built](https://github.com/moby/moby/issues/43595).
2022-08-31py-pandas: add v1.4.4 (#32459)Adam J. Stewart1-0/+2
2022-08-31llvm: fix 15.0.0rc builds on MacOS with command-line-tools (#32397)Satish Balay1-5/+18
* llvm: fix 15.0.0rc builds on MacOS with command-line-tools Ref: https://github.com/llvm/llvm-project/issues/57037 i.e use -DBUILTINS_CMAKE_ARGS=-DCOMPILER_RT_ENABLE_IOS=OFF. But this needs switching "compiler-rt" from "projects" to "runtimes". Also fixing the warnings below fixes compile errors CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libcxx is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libcxx or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libcxxabi is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libcxxabi or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libunwind is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libunwind or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. /private/var/folders/nt/_m1t_x7j76q6sl3xt91tqgs00000gn/T/balay/spack-stage/spack-stage-llvm-15.0.0-rc2-h2t5bohzyy7exz2ub3m42pfycjcmbndk/spack-build-h2t5boh/include/c++/v1/cstdlib:135:9: error: no member named 'at_quick_exit' in the global namespace using ::at_quick_exit _LIBCPP_USING_IF_EXISTS; ~~^ * Update var/spack/repos/builtin/packages/llvm/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-31py-breathe: add new version and improve version constraints (#31857)Seth R. Johnson1-1/+5
* py-breathe: add new version and improve version constraints * py-breathe: everyone loves versions ``` py-breathe, py-breathe in the air don't be afraid to care ```` * Update var/spack/repos/builtin/packages/py-breathe/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * add comment Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-31hdf5-vol-log: Update package versions and update HDF5 dependency to version ↵Larry Knox1-2/+4
1.13.2 (#32448) * Add HDF5 version 1.13.2. Remove HDF5 versions 1.13.0 and 1.13.1. * Correct formatting. * Update vol-log-based versions and HDF5 dependency version.
2022-08-31bdw-gc: add v8.2.2 (#32453)Ivan Maidanski1-1/+2
2022-08-30py-gpytorch: add v1.9.0 (#32445)Adam J. Stewart2-2/+29
2022-08-30py-kornia: add v0.6.7 (#32447)Adam J. Stewart1-0/+1
2022-08-30New package: py-mkdocstrings-python (#32421)Ryan Marcellino1-0/+21
2022-08-30added STAT 4.2.0 and updated deps (#32385)Gregory Lee3-3/+13
* added STAT 4.2.0 and updated deps * launchmon package fix and style fixes * launchmon package fix * Update var/spack/repos/builtin/packages/launchmon/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libatomic_ops: add v7.6.14 (#32418)Ivan Maidanski1-1/+2
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libxml2: fix building with nvhpc (#32440)Harmen Stoppels2-36/+1
2022-08-30root: new bugfix version 6.26.06 (#32230)Wouter Deconinck1-0/+13
2022-08-30oprnmx: fix to build with Fujitsu compiler. (#32389)Toyohisa Kameyama1-1/+1
2022-08-30coreutils: add support for external find (#32414)Olivier Cessenat1-0/+10
2022-08-30hipsycl: fix building on OSX. Patch boost to be backward-compatible. (#31311)David M. Rogers1-3/+7
Co-authored-by: frobnitzem <frobnitzem@users.noreply.github.com>
2022-08-30scorep: modify configure flags for Cray platforms (#32201)luker1-2/+4
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