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2019-03-26nix package: improve dependencies based on prerequisites from manual. (#10927)Chris Green1-4/+6
2019-03-26ior package: Add patch to fix 3.2.0 with hdf5 (#10923)Michael Kuhn1-0/+6
2019-03-26quantum-espresso: Enable EPW installation (#10637)fcannini1-1/+33
2019-03-26mysql: Support client-only, cxxstd and more versions (#10911)Chris Green2-7/+114
* add cxxstd variant * add CMake constraints based on platform/version * add older versions * update boost dependency version constraints (which are closely tied to mysql version) and update boost cxxstd choice to be the same as the cxxstd chosen for mysql * add client-only support (including a patch for 5.5.x) * record the mysql package as a provider of the mysql-client virtual
2019-03-26boost: Fix build of versions < 1.62.0 (#10910)Chris Green1-28/+19
Improve management of the Fiber library and C++ standard support: * Remove Fiber from list of libraries to build * Improve variant management for Fiber; add variants for Context and Coroutine libraries. * Add known conflict with C++17 for boost < 1.63.0 * Remove C++ standard "default" option, which left the choice of C++ standard to the compiler used to build boost
2019-03-26lz4: Add 1.8.3 (#11013)Michael Kuhn1-2/+3
2019-03-26zstd: Add 1.3.8 (#11012)Michael Kuhn1-0/+1
2019-03-25ninja-fortran package: add newer versions (#10921)clellsolomon1-7/+27
2019-03-25New package: MMG (#10902)bfovet1-0/+58
2019-03-25netcdf-cxx package: Add optional netCDF4 support (#10899)Dustin Lagoy1-0/+11
2019-03-25range-v3 package: Add notes, conflicts and doc dependencies. (#10887)Chris Green1-1/+16
* record conflicts with compiler versions which don't provide required c++ standard support * add doxygen (build) dependency * add note that range-v3 is header-only as of 0.3.6 and update package description
2019-03-25gl2ps: add missing dependencies and doc variant. (#10886)Chris Green1-3/+11
Makes building of documentation optional.
2019-03-25py-netcdf4: avoid using system installs of dependencies (#10885)Dustin Lagoy1-0/+10
Use environment variables to point setup.py to Spack installations of hdf5/netcdf
2019-03-25postgresql package: build enhancements. (#10877)Chris Green1-7/+83
We add new variants to handle readline vs libedit, a client-only build and install, and bindings to TCL, Python and Perl. We also add new versions and the ability to detect remote versions not otherwise dealt with.
2019-03-25New package: elmer-fem (#10860)simo-tuomisto1-0/+87
Elmer finite element method solver; builds Elmer, ElmerICE and contributed solvers with MPI support.
2019-03-25LLVM package: disable CUDA (#10858)Omar Padron1-0/+19
This avoids using a system-installed CUDA package. In the future a variant can be added to allow using Spack-installed CUDA, but for now CUDA support is always disabled.
2019-03-25Conduit package: add option to build with hdf5 versions > 1.8 (#10913)Brian Van Essen1-2/+6
Added a variant to allow conduit to build with newer versions of HDF5. Set the default for the variant to prefer compatibility mode with HDF5 v1.8
2019-03-24xsdk: enable sundials@4.1.0 for xsdk@develop (#10989)Satish Balay1-3/+3
- disable sundials varaiant for dealii and mfem - as they are incomatible with sundials@4.1.0
2019-03-24hypre: add superlu-dist variant (#10985)Satish Balay2-0/+24
- add a patch to fix build error with superlu-dist
2019-03-24amrex: current @develop - and future releases require cmake@3.13 or higher ↵Satish Balay1-1/+2
(#10953)
2019-03-24Added a package for chapel. (#11002)Navdeep Rana1-0/+17
* Added a package for chapel. * flake8 compliance.
2019-03-24environment-modules: add version 4.2.3 (#11003)Xavier Delaruelle1-1/+2
2019-03-24petsc: workaround xcode stub-out-of-sync issue (#10999)Denis Davydov2-0/+63
2019-03-23Packages/zoltan (#10432)Daryl W. Grunau2-0/+25
* serialize the F90 interface build * serialize the F90 interface build
2019-03-22add ninja v1.9.0 (#10994)Stephen McDowell1-1/+2
2019-03-22netgen: update broken URL (#10882)Eric Martin1-2/+2
* netgen: update broken URL * netgen: fix url_for_version URL
2019-03-22openfoam-com: Fix flex dependency (#10956)Michael Kuhn1-1/+1
openfoam-com needs flex's FlexLexer.h, which can only be found if flex is also a link dependency.
2019-03-22vdt: Add version 0.4.3 (#10982)Eric Martin1-0/+1
2019-03-22py-hpccm: New package (#10957)Michael Kuhn1-0/+20
2019-03-22canu: Add versions 1.8 and 1.7 (#10978)Eric Martin1-0/+2
2019-03-22megahit: Add version 1.1.4 (#10979)Eric Martin1-0/+1
2019-03-22racon: Add versions 1.3.2 and 1.3.1 (#10980)Eric Martin1-0/+2
2019-03-22trimgalore: Add versions 0.6.0 and 0.6.1 (#10981)Eric Martin1-0/+2
2019-03-22bowtie: Add missing zlib dependency (#10984)Eric Martin1-0/+1
2019-03-22gdb: add version 8.2.1 (#10988)Matthias Diener1-0/+1
2019-03-22ACTS: add version 0.8.2 (#10974)Hadrien G1-1/+2
2019-03-22add ginkgo package, use it in dealii along with symengine (#10917)Denis Davydov3-3/+76
2019-03-21add eigen v3.3.7 (#10955)Stephen McDowell1-0/+1
2019-03-20update R to v3.5.3 (#10928)Patrick Schratz1-0/+1
* update R to v3.5.3
2019-03-20mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919)Michael Kuhn1-0/+3
2019-03-20pkgconf: add 1.6.0 (#10942)Michael Kuhn1-0/+1
2019-03-20Update GMSH to 4.2.2 with OpenMP variant (#10914)bfovet1-3/+16
2019-03-20saga-gis: new versions up to 7.3.0 (#10922)Patrick Schratz1-1/+4
2019-03-20gettext: fix dependency type of xz (#10935)Denis Davydov1-1/+1
2019-03-20added yara (#10901)sknigh1-0/+21
2019-03-20gromacs: make sure cuda support is disabled when cuda=False (#10936)fcannini1-0/+2
* abinit: Fix building with hdf5/netcdf. * gromacs: Fix attempt to build with cuda support when 'cuda=False' If for some reason there's a cuda toolkit installed by other means, (i.e. not by spack) cmake will still try to build with cuda support, even though 'cuda=False' is the default of the spec. * Revert "abinit: Fix building with hdf5/netcdf." This reverts commit e16f725e37b91193fe519b1821446c76ab551928. This should not be here.
2019-03-20libfabric: add 1.6.2 (#10918)Michael Kuhn1-0/+1
2019-03-20git: add version 2.21.0 (#10937)Matthias Diener1-0/+5
2019-03-20strace: add 5.0 (#10940)Michael Kuhn1-0/+1
2019-03-20libeatmydata: new package (#10941)Michael Kuhn1-0/+24