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2022-12-10py-setuptools-scm-git-archive: add 1.4 (#34422)Manuela Kuhn1-0/+1
2022-12-10py-{boto3,botocore,jmespath,s3transfer} bump (#34423)Harmen Stoppels4-14/+56
2022-12-10valgrind: add v3.20.0, mark macOS conflict (#34436)Adam J. Stewart1-2/+9
2022-12-09Support for building Pmix with Debian/Ubuntu external dependencies (#32690)Abhik Sarkar3-0/+36
* Debian like distros use multiarch implementation spec https://wiki.ubuntu.com/MultiarchSpec Instead of being limited to /usr/lib64, architecture based lib directories are used. For instance, under ubuntu a library package on x86_64 installs binaries under /usr/lib/x86_64-linux-gnu. Building pmix with external dependencies like hwloc or libevent fail as with prefix set to /usr, that prefix works for headers and binaries but does not work for libraries. The default location for library /usr/lib64 does not hold installed binaries. Pmix build options --with-libevent and --with-libhwloc allow us to specify dependent library locations. This commit is an effort to highlight and resolve such an issue when a users want to use Debian like distro library packages and use spack to build pmix. There maybe other packages that might be impacted in a similar way. * Adding libs property to hwloc and libevent and some cleanups to pmix patch * Fixing style and adding comment on Pmix' 32-bit hwloc version detection issue
2022-12-09py-simplejson: add 3.18.0 (#34430)Manuela Kuhn1-1/+2
2022-12-09package/qt-base: add conflict for older gcc (#34420)Sinan1-0/+3
2022-12-09geant4: version bumps for Geant4 11.1.0 release (#34428)Ben Morgan4-5/+26
* geant4: version bumps for Geant4 11.1.0 - Version bumps for new data libraries - g4ndl 4.7 - g4emlow 8.2 - Add geant4-data@11.1.0 - Checksum new Geant4 11.1.0 release - Limit +python variant to maximum of :11.0 due to removal of Geant4Py in 11.1 - Update CLHEP dependency to at least 2.4.6.0 for this release - Update VecGeom dependency to at least 1.2.0 for this release, closing version ranges for older releases to prevent multiple versions satisfying requirement * geant4: correct max version for python support
2022-12-09[darshan-runtime, darshan-util, py-darshan]: darshan 3.4.1 release updates ↵shanedsnyder3-2/+24
(#34294)
2022-12-09New package: py-torchdiffeq (#34409)Jen Herting1-0/+20
* [py-torchdiffeq] new package * [@spackbot] updating style on behalf of qwertos Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-12-09py-nbformat: add 5.7.0 and new package py-hatch-nodejs-version (#34361)Manuela Kuhn2-6/+29
2022-12-09py-setupmeta: add 3.3.2 (#34421)Manuela Kuhn1-0/+1
2022-12-09py-torchvision: fix typo in version restriction for ffmpeg (#34415)snehring1-1/+1
2022-12-09Add checksum for py-packaging11 0.12.3 (#34402)iarspider1-0/+2
2022-12-09Windows: reenable unit tests (#33385)John W. Parent1-3/+11
Unit tests on Windows are supposed to pass for any PR to pass CI. However, the return code for the unit test command was not being checked, which meant this check was always passing (effectively disabled). This PR * Properly checks the result of the unit tests and fails if the unit tests fail * Fixes (or disables on Windows) a number of tests which have "drifted" out of support on Windows since this check was effectively disabled
2022-12-09btop++: add new package (#34399)Massimiliano Culpo1-0/+26
2022-12-09Add checksum for py-onnxmltools 1.11.1 (#34400)iarspider1-0/+7
2022-12-09Add pika-algorithms package and pika 0.11.0 (#34397)Mikael Simberg3-3/+59
* Add 20 as a valid option for cxxstd to fmt * Add pika 0.11.0 * Fix version constraint for p2300 variant in pika package * Add pika-algorithms package
2022-12-08py-reportlab: add 3.6.12 (#34396)Manuela Kuhn1-0/+14
* py-reportlab: add 3.6.12 * Update var/spack/repos/builtin/packages/py-reportlab/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-08intel-mkl: It is only available for x86_64 (#34391)Bernhard Kaindl1-0/+4
2022-12-08bcache: Fix check for libintl to work correctly (#34383)Bernhard Kaindl1-1/+1
2022-12-08bash: add v5.2, readline patches (#34301)Adam J. Stewart3-94/+51
2022-12-08py-rdflib: add 6.2.0 (#34394)Manuela Kuhn1-1/+5
2022-12-08dlb: new package (#34211)Victor Lopez Herrero1-0/+44
2022-12-08Update hdf5 vol async version (#34376)Larry Knox1-0/+1
* Add version hdf5-vol-async@1.4
2022-12-08pixman: add libs property (#34281)Glenn Johnson1-0/+4
2022-12-08py-torch: fix build with gcc@12: (#34352)Michael Kuhn1-0/+9
2022-12-08libxcrypt: building @:4.4.17 requires automake@1.14:Brian Van Essen1-1/+1
2022-12-08Add texinfo dependency for binutils through version 2.38. (#34173)Jon Rood1-5/+2
2022-12-07Add recipe for singularity-hpc, py-spython (#34234)Marco De La Pierre2-0/+85
* adding recipe for singularity-hpc - 1st go * typo in singularity-hpc recipe * singularity-hpc, spython recipes: added platform variant * singularity-hpc, spython recipes: platform variant renamed to runtime * style fix * another style fix * yet another style fix (why are they not reported altogether) * singularity-hpc recipe: added Vanessa as maintainer * singularity-hpc recipe: add podman variant * singularity-hpc recipe: added variant for module system * shpc recipe: add version for py-semver dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-spython recipe: no need to specify generic python dep for a python pkg * py-spython: py-requests not needed Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-07SW4: new package (#34252)Houjun Tang1-0/+75
* sw4 * use h5z-zfp develop * update for macos * Update package.py Co-authored-by: Houjun Tang <tang@Houjuns-MacBook-Pro.local>
2022-12-07py-numba: add 0.56.4 (#34362)Manuela Kuhn1-19/+22
2022-12-07ftk: add 0.0.7.1 (#34146)Hanqi Guo1-2/+9
2022-12-07py-pywavelets: add 1.4.1 (#34369)Manuela Kuhn1-4/+9
* py-pywavelets: add 1.4.1 * Update var/spack/repos/builtin/packages/py-pywavelets/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pywavelets/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-07XRootD: add checksum + patch for 5.5.1 (#34209)iarspider1-1/+8
* Update package.py * Add full_index to patch URL * Update var/spack/repos/builtin/packages/xrootd/package.py * Restore list_url Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-12-07osu-micro-benchmarks: add v7.0.1 (#34221)MatthewLieber1-1/+17
Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2022-12-07libnrm: allow mpi other than mpich (#34232)eugeneswalker1-1/+1
2022-12-07[quantum-espresso] Parallel make fails for 6.{6,7} (#34238)Stephen Sachs1-2/+2
* [quantum-espresso] Parallel make fails for 6.{6,7} I run into a race condition in `make` with Intel compiler on icelake when building QE 6.6 and 6.7. * Fix comment Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-12-07update kealib to 1.5.0 (#34237)Sam Gillingham1-1/+2
2022-12-07darshan-util: fix location of input for darshan-util tests (#34245)shanedsnyder1-10/+14
* fix location of input for darshan-util tests Darshan log file used for test input was removed from the Darshan repo after the 3.4.0 release. This commit adds logic to use a different log file as test input for later Darshan versions.
2022-12-07meep: add new versions and additional variants incl. dependencies (#34242)Eric Müller4-13/+78
* libctl: add new version Change-Id: I16f91cfab198c66b60407ab5bb2cb3ebeac6bc19 * New package: libgdsii Change-Id: I34b52260ab68ecc857ddf8cc63b124adc2689a51 * New package: mpb Change-Id: I6fdf5321c33d6bdbcaa1569026139a8483a3bcf8 * meep: add new version and variants Change-Id: I0b60a9a4d9a329f7bde9027514467e17376e6a39 * meep: use with_or_without Change-Id: I05584cb13df8ee153ed385e77d367cb34e39777e
2022-12-07Fix Apptainer (#34329)Sam Grayson1-0/+15
* Fix Apptainer * Add comments
2022-12-07Paraview catalyst updates (#34364)kwryankrattiger2-3/+3
* LibCatalyst: Fix version of pre-release develop version * ParaView: Requires libcatalyst@2: * ParaView: Apply adios2 module no kit patch to 5.11 This patch is still pending in VTK and didn't make it into 5.11 as anticipated.
2022-12-07bcache: support external gettext when `libintl` is in glibc (#34114)Bernhard Kaindl1-1/+3
* bcache: support external gettext when `libintl` is in glibc Many glibc-based Linux systems don't have gettext's libintl because libintl is included in the standard system's glibc (libc) itself. When using `spack external find gettext` on those, packages like `bcache` which unconditionally to link using `-lintl` fail to link with -lintl. Description of the fix: The libs property of spack's gettext recipe returns the list of libs, so when gettext provides libintl, use it. When not, there is no separate liblint library and the libintl API is provided by glibc. Tested with `spack external find gettext` on glibc-based Linux and in musl-based Alpine Linux to make sure that when -lintl is really needed, it is really used and nothing breaks.
2022-12-07Package magma: cleaned up cmake config (#33766)G-Ragghianti1-34/+26
2022-12-07likwid: add a permission fixing script a la singularity (#33503)Matthias Wolf2-5/+61
2022-12-06Fix dependency specification for CuSolver variant in HiOp. (#34138)Cameron Rutherford1-6/+8
Co-authored-by: pelesh <peless@ornl.gov> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-12-06Add back depends_on directives needed to bootstrap on Python 3.6 (#34355)Massimiliano Culpo3-0/+14
This partially reverts commit 95b5d541291aae3b85a1582e2d0e39066ca4e17a.
2022-12-06htop: new version 3.2.1 (#34346)David Zmick1-1/+2
2022-12-06py-nbclient: add 0.7.2 and py-jupyter-core: add 5.1.0 (#34348)Manuela Kuhn2-3/+18
2022-12-06mercurial/py-pybind11: print_string no longer exists (#34340)Nicholas Sly2-4/+2
* Fix mercurial print_str failure. * Perform same fix on py-pybind11 for print_string missing method. Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>