Age | Commit message (Collapse) | Author | Files | Lines |
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* casper: create package
* jellyfish: added version 2.2.7
* casper: new package
* casper: depends on jellyfish 2.2.3 or higher
* casper: moved depends_on above install
* casper: updated package.py
* fixing download url for 1.11.1
* casper: set up environment
* casper: add conflicts gcc@7.1.0, cannot install with 7.1.0
* capser: flake8 error corrcted
* casper: create package
* jellyfish: added version 2.2.7
* casper: new package
* casper: depends on jellyfish 2.2.3 or higher
* casper: moved depends_on above install
* casper: updated package.py
* fixing download url for 1.11.1
* casper: set up environment
* casper: add conflicts gcc@7.1.0, cannot install with 7.1.0
* capser: flake8 error corrcted
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* A new package: jbigkit.
* A new package: jbigkit.
* Add a new package: jbigkit.
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* changed url for astyle
* use SourceForge
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* Fix git on ubuntu, first cut
Spack needs to pass information about where the linker
can find `libintl`. We're currently using `LDFLAGS` to do so.
The `LDFLAGS` info is pasted into the command line upstream
of the a file (`libgit.a`) that includes unresolved symbols that
need that library. This fails on Ubuntu, although it seems to
work on CentOS (see #6841).
This change allows git to build on a Ubuntu 16.04.3 droplet.
TODO: test on other platforms...
* Add a bit of useful commentary
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* perl-xml-simple: Create new package
* perl-xml-simple: fix homepage url
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Remove unnecessary double brackets in ADIOS2 and gearshifft packages.
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* Upgrade recipe for parmetis to be a CMakePackage
+ Eliminate `install` method (use the one from CMakePackage).
+ Move configure options to new method `cmake_args`
+ Move special install instructions for DarwinOS to a `run_after` method.
* Fix run_after section; Remove variant +debug.
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Control the find_package of the PNG variant explicitly.
This avoids picking up an "external" PNGwriter install in
case `~png` is picked by changing the default "AUTO" search
to explicit "ON" (required) of "OFF" (ignore if exists).
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* Siesta: add 3.2 and don't apply patch to 4.1
* siesta: fix bad optimization with Intel compiler
* siesta: Fix download URL
* siesta: build utilities too
* siesta: fix binary name collision
* siesta: Cleanup
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* blitz: update to version 1.0.1
* blitz: change URL for release tarballs
* blitz: update checksum of @1.0.0 after changing URL
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* py-psyclone: Code generation for the PSyKAl framework from the GungHo project
* py-psyclone: add installation tests based on py.test
* py-psyclone: define 'develop' version as latest master branch
* py-psyclone: extract tagged version 1.5.1 from git repo
* py-psyclone: whitespace adjustments for flake8
* py-psyclone: use compatible versions of py-fparser
* py-psyclone: use type='test' for selected dependencies
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* Updating OpenFAST to use explicit lapack and blas libraries from Spack.
* Simplifying openfast blas lib logic and fixes flake8 errors.
* Changing order of blas and lapack libs in openfast package.
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* sailfish: Create new package
* sailfish: fix tbb dependency
* sailfish: fix dependency type
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* py-pybedtools: Create new package
* py-pybedtools: add py-six requirement
* py-pybedtools: remove py-cython dependency for release version
* py-pybedtools: include minimum version of py-pysam
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* Add a package: ctffind.
* Add a package: ctffind.
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* Provide build_type variant for Metis.
+ Ideally, we would make Metis a CMakePackage, but `metis@:5` doesn't use CMake.
+ For now, provide a `build_type=` variant similar what is found in
CMakePackage.
+ There is a potential for duplicate specification of `CMAKE_BUILD_TYPE` if both
variants `+debug` and `build_type=` are specified. I am looking for advice on
how this can be resolved.
* Update metis recipe in response to flake8 and user comments.
+ Wrap comment lines that used more than 80 columns.
+ Change `+debug` variant to avoid potential for multiple `-DCMAKE_BUID_TYPE=`
arguments provided to cmake. Specifying this variant no longer appends this
configure option. However, if `+debug` is specified, require
`build_type=Debug` to maintain expected behavior.
* For metis, remove +debug variant; use build_type= instead.
+ Update recipe for metis@4 to extract `build_type=` values and set `OPTFLAGS`
accordingly.
+ For metis@5:, the behavior from the previously supported variant `+debug` can
be obtained with the options `+gdb build_type=Debug`
* Conflicts added for metis@4 when build_type != Release|Debug.
* Use spack function conflicts instead of 'raise InstallError'.
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And update to 3.6
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* Create a symbolic link for MotionCor2.
* Create a symbolic link for MotionCor2.
* Create a symbolic link for MotionCor2.
* Create a symbolic link for MotionCor2.
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* Revert "Added i3 and its dependencies. (#6805)"
This reverts commit a00a09a234886d3bb4e53f873579a56aca11d3ba.
* Revert "Adding NEURON simulator package (#5097)"
This reverts commit d24782c86d84d51ac3ef7404c9e4a4eb6b9eab7e.
* Revert "openssl: Add perl dependency (#5188)"
This reverts commit 395ee97f3b1cdd96ae00bdae6d27d3145c50fc5e.
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* Adding NEURON package widely used in computational neuroscience community
* flake8 fixes
* Add rx3d variant
* Addressed review comments from Adam
* Addressed 2nd review comments
* Added check for +mpi on bg-q
* Filter spack compiler wrappers in NEURON scripts
Add gcc march=native flag to make front-end build robust
* Make develop as preferred version due to bug in long filename handlings in <= v7.4
* Avoid use of gcc in cross compiling environment
Use arch specific options on cray and bg-q arch
* Simplify cross compiling build:
- v7.5 added and no longer need develop as preferred version
- legacy cray related options removed
- cross compiling args reduced
- python arguments reduced as neuron finds proper libraries
* Simplify bg-q configurations
* Cleanup and unify arch options
* Make sure to add commonly available packages as dependency
* Arch path added to dependent_environment as nrniv needed at runtime
* Support for Power 8 architecture
* Fix python3 on OS X
* flake8 fix
* remove unnecessary conflcist directives
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perl is required for the configure script.
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* Added a package for the MDAnalysis toolkit.
* Added a patch file to get rid of compiler warnings with intel compiler
and inlining. Added checksum values for other versions of protobuf.
* Added dependency on Intel compiler for intel patch
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* added variant examples to paraview package.py
* qt: added libxt dependency
* add variant to use external hdf5, this is needed when compiling with gcc@4.8.5
* paraview: added python dependecies to PYTHONPATH
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(#5977)
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* Start adding Nek5000 package
* Add tools to install: genmap, prenek, postnek
* Address comments by @davydden
* Use install_tree (thanks @junghans) and polish
* Update url
* Fix flake formatting errors
* Change F77 and CC compilers
Apparently spack compilers can't be called outside spack and we
have an underscore test in our Nek5000/core/makenek.inc file which
calls F77 compiler.
* Add support for visit and profiling options
* Fix a typo
* Fix a typo
* Remove the C check
* Add visit variant
* Update the install of int_tp tool
* Let MAXNEL to be set during installation
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* Added magma package
* Incorporated Serban's change
* Remove deleted files
* argparse.py
* Sync forked Spack repo in github
* Add spectrum-mpi lib path to LD_LIBRAY_PATH in spack_env.
As a result of supporting alternate installation directories, spectrum-mpi does
not use rpath anymore, so we need to set LD_LIBRARY_PATH in spack_env to allow
MPI programs to run during dependent package configuration.
* Fix flake8 error (blank line at EOF)
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* RNA-SeQC: Create new package
* RNA-SeQC: Fix flake8 error
* RNA-SeQC: Fix Travis error
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* qt: add 5.10.0, fix macOS build, clean-up comments/TODOs
* qt: fix pkgconfig files
* qt: restore-pc-files.patch
* add version constraint to the patch
* qt: adjust url_for_version for 5.10.0
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* xios: XML-IO-SERVER library for IO management of climate models
* xios: install to prefix directory
* xios: add a test case
* xios: define versions to use cache and mirror directories
* xios: use proper svn URL for version 910
* xios: package url must be defined, otherwise uninstall fails
* xios: add trunk version to allow building latest revision
* xios: enable parallel build
* xios: allow installation with mpif90 compiler wrappers
* xios: use mpi variants of dependencies
* xios: allow user to specify MPI launcher via MPIRUN environment variable
* xios: prefer spack versions of blitz and boost (needed for gcc@7)
* xios: enable builds with clang+gfortran on OSX
* xios: use numeric versions for releases, @develop for trunk
* xios: different patches required for @1.0 and @develop
* xios: patch function for clang works across revisions
* xios: link blitz library
* xios: workaround bug 17782 in llvm
* xios: whitespace adjustments for flake8
* xios: avoid bare except clause
* xios: netcdf-fortran inherits ^netcdf+mpi from xios dependencies
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* py-umi-tools: Create new package
* py-umi-tools: fix dependencies
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* combine all patches for 1612 into a single file, with additional
comments to explain the rational.
* Add kahip decomposition variant.
* Add support for ARM64 architecture.
* filter instead of patching etc/config.*/settings. This eliminates
patch files for 1706, perhaps for the future as well.
* URLs at or before version 1612 have a different structure, so
provide a url_for_version implementation to handle this
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* package/r-rjags: create new package
* fix typo
fix typo
* package/r-rjags small fix to pass flake8 tests
* package/r-rjags: more fixes to satisfy flake8 tests
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* Update motioncor2 to 1.0.4 and add libtiff dependency.
* Add comments for libtiff dependency in MotionCor2.
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