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2020-12-26llvm: provide fix for python dependencies (#20356)Robert Underwood2-1/+27
Previously compiler-rt didn't correctly passthrough cmake variables for python when building the various santizers. This patch passes these variables through. This patch may also correctly apply to any version of LLVM to any version of LLVM that uses the newer monorepo style organization, and any older llvm newer than 7.0.0 as long as the paths were set appropriately. However, this was not done so because it was not tested with older LLVM releases. Fixes #19908 See also: https://bugs.llvm.org/show_bug.cgi?id=48180
2020-12-25dpdk: add conflicts('target=aarch64:') (#20550)h-denpo1-8/+2
2020-12-25molden: Fix for aarch64 (#20549)Tomoyasu Nojiri2-0/+15
2020-12-25PFAPACK: Add new package (#20365)kuramoto-fj1-0/+64
* PFAPACK: Add new package * PFAPACK : fix flake8 errors * add type=(build, run) to the recipe
2020-12-25Lis: Add new package (#20548)kuramoto-fj1-0/+37
* Lis: Add new package * delete unnecessary inner quotes
2020-12-25openwsman: fix detect python executable (#20317)Toyohisa Kameyama1-5/+61
* openwsman: fix detect python executable - use spack's python insted of system's python - Add variant to use python. - fix dependency. - support python2. * format fixed. * fix python command.
2020-12-25openfdtd: Add version 2.6.0 (#20460)Tomoyasu Nojiri1-1/+3
2020-12-25openstf: Add version 1.7.0 (#20461)Tomoyasu Nojiri1-1/+3
2020-12-25New package: py-pydmd (#19809)a-saitoh-fj2-0/+80
* New package: py-pydmd * modified:package.py * modified: package.py
2020-12-24cfitsio: new versions and new url sheme (#20084)lorddavidiii1-6/+12
* cfitsio: new versions and new url sheme * cfitsio: fix version order
2020-12-24mumps: Fix dependency issues in shared licenses (#20197)Tom Payerle2-0/+44
See issue #19644 This script makes lib[cdsz]mumps.so explicitly depend on libmumps_common.so (and libmpiseq.so if ~mpi)
2020-12-24unifyfs: dependency changes and new release (#20271)Cameron Stanavige1-5/+13
This updates the UnifyFS packages to account for the latest v0.9.1 release. Updates required and optional dependencies for the respective releases. Locks margo and mercury dependencies at specific versions while integration with their latest versions is still in progress.
2020-12-24openipmi: fix dependency and add version 2.0.29 (#20276)Toyohisa Kameyama2-4/+20
* openipmi: fix dependency and add version 2.0.29 - Add perl and readline dependency - fix dependency type - Fix readline bug in 2.0.27 (https://sourceforge.net/p/openipmi/code/ci/d1dd570cf77cb2c63bc32bef12d5353e3a197146/) - Add 2.0.29 * Add patch file.
2020-12-24adding cce to compilers that patch gdbm (#20353)Asher Mancinelli1-0/+1
2020-12-24fix rocm_3.8.0 build error for rocprim,rocrand,rocfft packages (#20446)Sreenivasa Murthy Kolam1-1/+4
* fix rocm_3.8.0 build error for rocprim,rocrand,rocfft packages * fix flake8 errors
2020-12-24Add pem package file (#20447)Joshua S Brown1-0/+29
* Add pem package file * Cleanup formatting * Replace homepage with url to ReadtheDocs * Simplify package description
2020-12-24mesa: Add missing expat dependency (#20459)Chuck Atkins1-0/+1
2020-12-24libjson: Fix install parameters (#20470)Tomoyasu Nojiri1-0/+3
2020-12-24[acts] Add version 4 (#20472)Hadrien G1-0/+2
* Add acts v4 * Please flake8
2020-12-24xios: add support for Fujitsu compilers (#20474)Gilles Gouaillardet1-1/+1
2020-12-24Adding CUDA 11.2.0 (#20477)Filippo Spiga1-0/+4
2020-12-24salmon-tddft: new package. (#20543)Toyohisa Kameyama4-0/+580
* salmon-tddft: new package. * remove debug print. * remove duplicate line.
2020-12-24Starting with HDF5 1.10.0, the H5FD_class_t structure has a new (#20529)QuellynSnead2-0/+13
"terminate" member. Initialize it to NULL.
2020-12-24fftw: PGI compiler has trouble with avx2/avx-512 SIMD support (#20546)QuellynSnead1-3/+8
* PGI compiler has trouble with avx2 SIMD support (https://github.com/FFTW/fftw3/issues/78) * Hew to the project's preferred indentation standard. * Expand '%nvhpc' logic to include '%pgi'. * Exceeded the max line-length. * Break up the long compound statement into nested if's. * Inadvertently picked up an extraneous file. * PGI compiler has trouble with avx2/avx-512 SIMD support, too.
2020-12-24zoltan: Add PGI runtime libs to LDFLAGS (#20547)QuellynSnead1-1/+6
* Add PGI runtime libs to LDFLAGS when '%pgi' in spec. * Revert "Add PGI runtime libs to LDFLAGS when '%pgi' in spec." This reverts commit 31c3ef8ea22156fdeef6f82a29e9cea8ac86f006. * Add PGI runtime libs to LDFLAGS when '%pgi' in spec.
2020-12-24Dropped parametis dependency in 0.82 release (#20481)Kody J. Everson1-1/+1
2020-12-24nbdkit: Fix configure arg (#20488)Tomoyasu Nojiri1-0/+4
2020-12-24Add libvori and support for libvori (and spglib) in CP2K (#20508)Tiziano Müller2-0/+39
* packages: initial commit of libvori * cp2k: add support for libvori * cp2k: add support for spglib
2020-12-24openfoam: update for version 20.12 (#20533)Mark Olesen1-0/+1
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-12-24Fixed for merging patches for Fujitsu compiler in version 0.3.13 (#20539)a-saitoh-fj1-2/+4
2020-12-24Update to the latest version (1.6.0) (#20540)a-saitoh-fj1-0/+2
2020-12-24mptensor: Add new package (#20542)kuramoto-fj1-0/+55
2020-12-24babelflow: Add spec (#20544)Tomoyasu Nojiri1-0/+1
2020-12-24libgff: new package at version 2.0.0 (#20233)Alexander Baumgarten1-0/+19
* libgff: new package at version 2.0.0 * Removed default cmake function, fixed flake8 error * Fixed errors
2020-12-24sqlite: add 3.34.0 (#20354)Michael Kuhn1-0/+1
2020-12-24py-lxml: Add Version 4.6.1 (#20361)Dr. Christian Tacke1-2/+3
Also switch homepage to https.
2020-12-24New versions: py-sphinxcontrib-bibtex 2.2.0 and py-pybtex-docutils 0.2.2 ↵Paul R. C. Kent2-4/+13
(#20438) * Add v2.0.0 * Add 0.2.2 * Improve packages * No trailing
2020-12-24Add lbann cmake flags (#20452)Brian Van Essen2-30/+40
* Adding support for the CMake flags in LBANN that are missing. * Added new flag to OpenCV dependency and removed negative variants since OpenCV no longer turns on everything by default. Removed CMake flags in LBANN that have been deprecated. * Removed type='build' flags from dependencies so that they get linked into a environment's view. * Removed type='build' flags from dependencies so that they get linked into a environment's view. Fixed DiHydrogen variant to enable DistConv feature, renamed to +distconv from +legacy. Added conflicts line to indicated that DistConv and ROCm don't work with +half support. * Fixed Flake8 and cleaned up ordering of variants. * Flake8 * Backed out changes to not mark and cmake and ninja as build dependencies, which was introduced to make sure that they appear in a spack environment. * Backed out changes to not mark doc related packages as build dependencies, which was introduced to make sure that they appear in a spack environment. * Fixed how recipe communicates the intent to build and run tests to the package CMake.
2020-12-24Add py-ez-setup package file (#20520)Joshua S Brown1-0/+18
* Add py-ez-setup package file * Cleanup formatting * Cleanup formatting take 2
2020-12-24Update ParallelCluster to v2.10.1 (#20524)tilne1-1/+2
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-12-24[gcc] Make ISL optional by adding a +graphite variant (#20531)zorun1-5/+8
Fixes: #20515 Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-24[gcc] Explicitly disable libs when they are not required (#20532)zorun1-0/+1
This is to make sure that the build system doesn't pick up a library that would happen to be available. Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-23style: ensure that all packages pass `spack style -a`Todd Gamblin28-109/+109
- fix trailing whitespace and other issues uncovered by better flake8 checking. - fix extra whitespace printed by `spack style` command
2020-12-23Add Intel oneAPI packages (#20411)Robert Cohn10-0/+305
This creates a set of packages which all use the same script to install components of Intel oneAPI. This includes: * An inheritable IntelOneApiPackage which knows how to invoke the installation script based on which components are requested * For components which include headers/libraries, an inheritable IntelOneApiLibraryPackage is provided to locate them * Individual packages for DAL, DNN, TBB, etc. * A package for the Intel oneAPI compilers (icx/ifx). This also includes icc/ifortran but these are not currently detected in this PR
2020-12-23papi: patch fortran tests for Cray FTN compiler (#20339)Howard Pritchard2-0/+58
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2020-12-22Add patch to fix bazel build on power9 (#20512)Harsh Bhatia2-0/+71
* fix bazel on power9 * small fix in tensorflow package * removed import not needed anymore
2020-12-22Patch meson.build llvm config strategy (#20451)Ben Bergen1-0/+6
This patch logic resovles a linking issue with ncurses in the mesa package. This appears to be a recurring problem that was identified in the mesa gitlab issues here: https://gitlab.freedesktop.org/mesa/mesa/-/issues/2843 Using `_llvm_method = 'auto'` is broken. This patch replaces that with `_llvm_method = 'config-tool'`, which is a hack, but makes it possible to build. I have commented on the closed issue (2843), referencing the original author of the bug, and one of the mesa developers, so perhaps they will fix the problem.
2020-12-21Corrected Go dependent build environment. (#18493)Paul1-7/+8
* Dependencies of Go will now correctly set the GOPATH for the appropriate spec to avoid using the user's default path. * Bumped version to latest releases(1.15.6 & 1.14.13).
2020-12-21ParaView: add new ParaView-5.9.0-RC3 release (#20500)Vicente Bolea1-1/+1
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2020-12-21clingo: prefer master branchTodd Gamblin1-1/+1
Most people installing `clingo` with Spack are going to be doing it to use the new concretizer, and that requires the `master` branch. - [x] make `master` the default so we don't have to keep telling people to install `clingo@master`. We'll update the preferred version when there's a new release.
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