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2022-08-23cpu-features: fix fetch failure (#32325)iarspider1-1/+2
* cpu-features: fix fetch failure `master` branch was renamed to `main` * Update var/spack/repos/builtin/packages/cpu-features/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-23intel-oneapi-compilers-classic: fix paths (#32305)Robert Cohn1-1/+7
* Fix intel-oneapi-compilers-classic bin path * Update package.py * intel-oneapi-compilers-classic fix path Co-authored-by: OfirGan <offirgan@gmail.com>
2022-08-23minc-toolkit: add MINC_TOOLKIT environment variable at runtime (#32331)Ben Darwin1-0/+3
This variable is used by some programs both internal and external to the toolkit itself to discover shared objects, data, etc.
2022-08-23py-scipy: Fortran compiler specify code is change to setup.cfg for Fujitsu ↵Toyohisa Kameyama1-6/+7
compiler (#32142) * py-numpy: Change Fortran detect order for Fujitsu Compiler. * create setup.cfg instead of command line.
2022-08-23New package: py-loguru (#32074)Jen Herting1-0/+25
* [py-loguru] New package * [py-loguru] Removed commented out line * [py-loguru] Added types removed extra dependencies * [py-loguru] missing windows dependency. listing windows as a conflict for now * [py-loguru] depends on py-colorama when platform=windows * [py-loguru] flake8 * [py-loguru] Import update * [py-loguru] - python is a runtime dependency - setuptools is a build dependency * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23New package: py-python-javabridge (#32075)Jen Herting1-0/+21
* [py-python-javabridge] New package * [py-python-javabridge] Added dependencies * [py-python-javabridge] Added types * [py-python-javabridge] py-setuptools and java are dependencies * [py-python-javabridge] Import update * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23libfabric: new versions (#32083)Martin Pokorny1-1/+5
* libfabric: add new versions 1.15.0, 1.15.1, main (previously named master) * Add OPX fabric option, with conflict for versions before v1.15.0 Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-23SDK: Quick fix to allow SDK to build with HIP (#32321)kwryankrattiger1-1/+5
2022-08-23Add cxxstd flag to googletest and default mock to true (#32171)Seth R. Johnson2-17/+23
2022-08-23Geant4: update cmake defines and add support for nvhpc (#32185)Seth R. Johnson1-17/+27
* geant4: use define function * geant4: Change new feature from conflicts to when * geant4: add support/conflicts for nvhpc * fixup! geant4: add support/conflicts for nvhpc
2022-08-23remove compiler optimize level limit of O2 for GCC (#32303)Zhilin Zheng1-5/+0
gfortran can make it with O3, it might be better to remove this limitation.
2022-08-23acts: add new dependency on vecmem and autodiff (#26790)Wouter Deconinck1-3/+9
Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2022-08-23Constrain `__skip_rocmclang` workaround in pika package (#32208)Mikael Simberg1-1/+1
2022-08-23ampl: Add new version and add variants for more install control. (#32317)robgics1-6/+37
2022-08-23eospac: support intel-classic@2021 (#32323)Daryl W. Grunau5-0/+76
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2022-08-23py-jupytext: add v1.14.1 (#32313)Ryan Marcellino1-1/+3
2022-08-23Kokkos: ROCm and CUDA are not compatible in Kokkos (#32181)kwryankrattiger1-0/+1
2022-08-23New package: py-mergedeep (#32322)Ryan Marcellino1-0/+19
2022-08-23New package: py-pymdown-extensions (#32324)Ryan Marcellino1-0/+20
2022-08-22Automated deployment to update package flux-core 2022-08-23 (#32320)Vanessasaurus1-1/+2
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-08-22Update ESMF from JCSDA/NOAA-EMC spack fork (esmf@8.3.0 with external ↵Dom Heinzeller1-33/+74
parallelio) (#32222) * Update ESMF package from JCSDA/NOAA-EMC spack fork * Update var/spack/repos/builtin/packages/esmf/package.py Fix url_for_version Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * [@spackbot] updating style on behalf of climbfuji Co-authored-by: Jim Edwards <jedwards@ucar.edu> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: climbfuji <climbfuji@users.noreply.github.com>
2022-08-22sundials: add v6.3.0 and logging-mpi variant (#32315)Cody Balos1-0/+10
2022-08-22New package: py-ghp-import (#32316)Ryan Marcellino1-0/+19
2022-08-22gaudi: consistent test dependencies when +examples (#32134)Wouter Deconinck1-1/+11
* gaudi: consistent test dependencies when +examples Gaudi requires testing to be enabled for examples to be built, so all test dependencies are also there for `+examples`. This PR fixes a missing pytest dependency when `+examples` is used but no testing is enabled. The construct with the loop is to ensure the identical dependencies are always used, even as version ranges my start to differ. Testing with gaudi_add_tests was added in v35r0. Some nosetests and QMtests were in the tree before, but not accessible it seems. The effective dependency since 35.0 is also applied for pytest, extending the range that was there before disentangling `optional`, at https://github.com/spack/spack/blob/9d67d1e0346203a20b7ba44940061da855d405ca/var/spack/repos/builtin/packages/gaudi/package.py * gaudi: version 36.7 in other PR...
2022-08-22dd4hep: add version 1.22 (#32209)Valentin Volkl1-0/+1
2022-08-22py-shapely: add v1.8.3 (#32218)Adam J. Stewart1-7/+9
2022-08-22New package: py-py-f90nml (#32314)Ryan Marcellino1-0/+20
2022-08-22VisIt: Add patch to include jpeg library in install. (#32245)Eric Brugger3-0/+87
2022-08-22hwloc: fix build with +onepai-level-zero (#31622)Mark Abraham1-2/+1
Flags to configure were erroneously managed to configure twice. Removed the one that was wrong so that a configure warning is no longer issued.
2022-08-22teckit: Fixes missing xmlparse.h issue. (#32295)Barry Rountree1-3/+17
The "release" tarball provided by github lacks several files in the SFconv/expat/xmlparse directory, including xmlparse. Using tarballs based off of version tags solves the problem. o Changes version() to use commits associated with version tags. o Adds several additional versions. o Adds myself as maintainer. o Adds hook to execute autogen.sh. o Adds autotools &ct dependences. o Removes expat dependence.
2022-08-22OpenMC: add v0.13.1 (#32263)Paul Romano2-14/+14
* openmc: add v0.13.1 * Add @paulromano as maintainer of openmc and py-openmc * Address review comments from @adamjstewart * Add back MPI variant in openmc package
2022-08-22crunch: add new package (#31980)Adam J. Stewart2-3/+26
2022-08-22helics: update v3 options and add missing versions (#32121)Ryan Mast1-11/+46
* helics: update v3 options and add missing versions * helics: allow using openssl 3.x for encryption support * helics: fix style errors * helics: Apply suggestion from code review Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-22Add checksum for py-requests 2.27.1, 2.28.0, 2.28.1 (#31896)iarspider1-1/+5
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-22deal.II 9.4: Fix issues due to override of CMake FIND_PACKAGE macro (#32079)Jean-Paul Pelteret1-0/+13
2022-08-22openmpi: fix patches for %nvhpc (#32308)Harmen Stoppels3-155/+0
2022-08-22xgboost: GCC 8+ required (#32282)Adam J. Stewart1-0/+2
2022-08-22racket: fix spec (#32304)Arjun Guha1-0/+2
2022-08-22py-rasterio: add v1.3.2 (#32277)Adam J. Stewart1-0/+1
2022-08-22HPX: ROCm and Cuda conflict needed (#32178)kwryankrattiger1-0/+3
Discovered this missing conflict when building the e4s enviroment with unify:when_possible. #31940
2022-08-22Provide patches provided by consumers of draco. (#32281)Kelly (KT) Thompson5-0/+183
2022-08-22draco: add v7_14_0 (#32267)Kendra Long!1-0/+1
2022-08-22VisIt: add conduit and mfem variants (#32255)Eric Brugger1-0/+30
2022-08-22keepassxc: option autotype with pcsclite (#32288)Olivier Cessenat1-0/+4
2022-08-22openfoam-org: add v9 and v10 (#32274)Jonas Thies1-0/+10
2022-08-22Molden: update URLs. (#32207)Rémi Lacroix1-2/+2
2022-08-22baurmc: correct compile flag (#31305)Valentin Volkl1-1/+5
2022-08-22prophecy4f: add hep tag, install to share (#31308)Valentin Volkl1-0/+4
2022-08-22hip@4.5.2: fix installation (#31416)Cory Bloor3-24/+36
In a fast-moving project with as many forks as LLVM, it's difficult to accurately determine if a function exists just by checking the version number. The existing version check fails, for example, with llvm-amdgpu from ROCm 4.5. It is more robust to directly check if the function exists.
2022-08-22VASP: add v6.3.2; handle changes to makefile.include naming pattern (#31701)Alan Sill1-0/+5
Added the SHA256 for version 6.3.2 and added logic to eal with the change of naming pattern for the makefile.include files that now appears to leave out the "linux_" prefix. (Changes should be. backwards compatible.) Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: alansill <alansill@users.noreply.github.com>