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2018-03-05bracken: Create new package (#7375)Eric1-0/+75
2018-03-05add -ldl to silo ldflags when building with static hdf5 in order to fix ↵Mike Pozulp1-0/+5
#7384 (#7385)
2018-03-05update for conduit 0.3.1 release (#7344)Cyrus Harrison1-10/+15
2018-03-05fix ruby build on gcc >= 7 (#7387)Eric Müller3-0/+170
* pkgconfig fixes a "libffi.a requires -fPIC" build error * the patches solve the mentioned problem on GCC 7.x
2018-03-01Rsync package: Fix Src Link (#7367)Axel Huebl1-1/+1
Fix the source link to rsync downloads. The old link only contained the latest release, the new link contains all.
2018-03-01new package: hiop (#7039)junkudo1-0/+75
2018-03-01new package: perl-parallel-forkmanager (#7049)Eric1-0/+34
2018-02-28help gdb pick up python3 (#7104)healther1-8/+8
* Update gdb to autotools package * Help gdb find python libraries for python 3
2018-02-28mpich@develop: needs git submodules (#7357)Omri Mor1-1/+1
2018-02-28new package: py-goatools (#7328)Eric1-0/+45
2018-02-28change recurse into recursive in a few places (#7342)Denis Davydov8-10/+10
2018-02-28minighost: fix build on Ubuntu (#7354)Christoph Junghans1-3/+4
* minighost: fix build on Ubuntu * minighost: append -lgfortran only for gcc
2018-02-28examinimd: fix a typo (#7352)Christoph Junghans1-1/+1
2018-02-27add package verilator (#7332)healther1-0/+80
* add verilator package * try to add environment variable and include folder * manually install existing scripts and patch out spack's CXX wrapper * added some comments * make flake8 happy
2018-02-27updating zfp version (#7304)Mark C. Miller1-8/+5
2018-02-27Added initial Spackage for examinimd (#7350)Robert Pavel1-0/+85
2018-02-27minighost package: fixed a typo (#7349)Christoph Junghans1-1/+1
2018-02-27aspcud@1.9.4: new package (#7094)Geoffrey Oxberry1-0/+53
2018-02-27MPark.Variant (#7251)Axel Huebl1-0/+38
Adds Michael Park's C++11 `std::variant` (a C++17 stdlib feature).
2018-02-27minighost: fix mpi build (#7310)Christoph Junghans1-1/+1
2018-02-27snbone: fix build gcc-4.8 (#7317)Christoph Junghans1-1/+3
2018-02-27spglib: add new package (#7321)Denis Davydov3-0/+98
2018-02-26cpu_features (#7302)Axel Huebl1-0/+43
Adds Google's new cpu_features library. Install was added recently, so don't take the `0.1.0` release but the current `master` until a new version is published.
2018-02-26llvm package: update python dependency (#7100)healther1-1/+2
llvm versions >= 5 can use python 3.x
2018-02-26branson: needs mpi-2 (#7319)Christoph Junghans1-1/+1
2018-02-26ebms: needs mpi-2 (#7320)Christoph Junghans1-1/+1
2018-02-26hpgmg: more sane defaults for a proxy (#7330)Christoph Junghans1-1/+1
2018-02-23llvm and llvm-lld package updates (#7313)Mike Pozulp2-51/+35
* Combined llvm and llvm-lld: removed the separate llvm-lld package and added llvm-lld as an optional add on to the llvm package (the way several other llvm tools are maintained e.g. lldb) * Added more lld hashes to llvm package * The 'CppBackend' target doesn't exist for version 3.9.0 or later so exclude it for later versions * Was incorrectly specifying 'sparc' as a target for the 'sparc' architecture - needed to specify 'Sparc' * Fix issue #7248 building llvm: don't make the LLVMDemangle target for llvm < 4.0.0
2018-02-23accfft: added new package (#7213)Massimiliano Culpo1-0/+66
2018-02-23QMCPACK - General Improvements (#6958)Nichols A. Romero2-69/+33
* No longer need to patch CMake. Using CMAKE_CXX_FLAGS to include BLAS/LAPACK/MKL header files properly. * Backport two patches to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/621, https://github.com/QMCPACK/qmcpack/pull/623 * Insufficient to include lapack_dir in CMAKE_CXX_FLAGS, CMAKE_C_FLAGS is also needed. * Make patched Espresso a default variant instead of a hard dependency. This is easier on computer architectures where Espresso is hard to build. * Fix patching with QE variant. Now using correct form of patch command. * Add QMCPACK v3.4.0 * Backport patch to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/643
2018-02-23fix url finding of lru-cache (#7118)healther1-1/+2
Change-Id: I65a93e3d5d1ea52a0be56bbc664c6b5d405e2bf4
2018-02-22maestrowf: new package (#7300)Francesco Di Natale1-0/+40
* Add Maestro Workflow Conductor to Spack * Removal of a trailing whitespace character.
2018-02-22nalu package: update dependency (#7245)Jon Rood1-3/+2
Yaml-cpp hasn't tagged a release in over 2 years, yet they have fixed many things and now have the ability to use find_package in CMake. Since we use this feature in Nalu, we require the latest yaml-cpp until they tag a new release. I have also deprecated the now unnecessary ENABLE_INSTALL flag.
2018-02-22remove dead Exact proxies (no fetch possible) (#7312)Christoph Junghans3-287/+0
2018-02-22ECP-CANDLE benchmark script (#7271)Brian Van Essen1-4/+8
* Added a package for the MDAnalysis toolkit. * Added a variant to the candle benchmark to make MPI support optional. * Added py-requests package.
2018-02-22Added virtualenvwrapper python package (#7270)Brian Van Essen4-0/+124
* Added a package for the MDAnalysis toolkit. * Adding a package for the Python virtualenvwrapper pacakge. Included dependent virtualenv-clone and stevedore packages. Updated py-pbr with a new version to support this. * Added extra necessary dependencies and fixed the file download paths.
2018-02-22Fixed Theano GPU support (#7325)Brian Van Essen4-2/+99
* Added a package for the MDAnalysis toolkit. * Added a new package for pygpu, which is the python front end of the libgpuarray. Additionally changed the dependency for theano so that it properly picks up the pygpu library. * Added the libcheck package. Fixed flake8 errors in py-pygpu recipe and removed spurious dependency on cudnn for libgpuarray.
2018-02-22bml: enable MPI by default (#7324)Christoph Junghans1-1/+1
2018-02-22bml: add version 1.2.3 (#7308)Christoph Junghans1-0/+1
2018-02-22yambo: added new package (#7301)Massimiliano Culpo2-2/+171
2018-02-21cohmm: use more sane defaults (#7296)Christoph Junghans1-1/+1
2018-02-21mkl: fix order of libs (#7280)Denis Davydov2-2/+2
2018-02-21clamr: needs cmake-3.1 (#7297)Christoph Junghans1-0/+1
Found in proxyapps/proxy-ci#2
2018-02-21nut: needs cmake-3.0 (#7298)Christoph Junghans1-0/+1
Found in proxyapps/proxy-ci#2
2018-02-21cbench set its environment using `setup_environment` (#7236)Massimiliano Culpo1-9/+9
The edit phase of cbench was used to set environment variables. Though this works, the variables set this way are not dumped to build.env. This commit fixes the issue by setting those variables in the `setup_environment` function.
2018-02-20py-pyvcf: versions 0.6.7 and 0.6.8 (#6743)peetsv1-0/+39
* py-pyvcf: versions 0.6.0 and 0.6.7 * adding dependencies * Changing location of source tarball * updating url to eliminate embedded checksum
2018-02-20new package: Soapdenovo2 (#7047)Yifan Zhu1-0/+43
2018-02-19perl-text-csv: Create new package (#7258)Eric1-0/+34
2018-02-19hdf5: fixing ~/+ fortran builds; updated to version 0.8.0 (#7260)Mark C. Miller1-1/+3
2018-02-19sundials: add the 'headers' and 'libs' properties (#7282)Veselin Dobrev1-3/+37
* [SUNDIALS] Add the 'headers' and 'libs' properties, plus a couple of small tweaks. * [SUNDIALS] Revert incorrectly changed conflicts() directive. Fix style.
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