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2019-10-12checksums: fix packages that needed new download locationsTodd Gamblin41-99/+83
Some packages had incorrect checksums because they needed to be downloaded from a new place or the package needed tweaking somehow. These packages to sha256 and the new checksums have been verified by fetching over https.
2019-10-12packages: remove packages that are no longer fetchableTodd Gamblin10-425/+0
These packages have either been retired or are no longer retrievable from any site we can find. They also aren't needed by other packages, so we're removing them from Spack. - allinea-reports: is now arm performance reports - globus-toolkit: retired, globus is now a paid service. - uberftp: used globus-toolkit, github site is retired. - mpiblast: site is dead; no longer fetchable. - py-mxnet: site and github are gone - soap2, soapindel, soapsnp: site is gone, unfetchable - arlecore: could not verify md5 securely
2019-10-12checksums: Remove or fix up unfetchable or unverifiable md5 versionsTodd Gamblin94-211/+37
This commit either removes remaining md5 checksums, or it replaces them with sha256 checksums verified by fetching over https.
2019-10-12checksums: use sha256 checksums everywhereTodd Gamblin2344-5768/+5742
We'd like to use a consistent checksum scheme everywhere so that we can: a) incorporate archive checksums into our specs and have a consistent hashing algorithm across all specs. b) index mirrors with a consistent type of checksum, and not one that is dependent on how spack packages are written. - [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
2019-10-11Add adiak package, version 0.1.1Matthew LeGendre1-0/+38
2019-10-11Fixed constraints in recipes for packages that depends on fftw (#13125)Massimiliano Culpo4-5/+6
2019-10-10Fix f18 install method (#13123)Nichols A. Romero1-6/+2
* Install method is broken and not needed. Built-in install method works fine. Just delete. * Change version to master.
2019-10-10Add patches and missing dependency to bash (#13084)Adam J. Stewart1-1/+22
2019-10-10Add mpfr 4.0.2 (#13091)Adam J. Stewart1-5/+8
2019-10-10Add tar 1.32 (#13099)Adam J. Stewart1-3/+11
2019-10-10sublime-text: New version, adapt install process (#13074)Jannek Squar1-6/+8
* Added new version, reworked installation process * Removed explicit addition to PATH
2019-10-10Add expat 2.2.9 (#13085)Adam J. Stewart1-5/+7
2019-10-10Add gettext 0.20.1 (#13086)Adam J. Stewart1-1/+2
2019-10-10Add isl 0.21 (#13087)Adam J. Stewart1-1/+3
2019-10-10Add libiconv 1.16 (#13088)Adam J. Stewart1-1/+2
2019-10-10Add libsigsegv 2.12 (#13089)Adam J. Stewart1-3/+4
2019-10-10Add latest openssl releases (#13092)Adam J. Stewart1-2/+5
2019-10-10Add latest Perl releases (#13093)Adam J. Stewart1-4/+5
2019-10-10Add pkgconf 1.6.3 (#13094)Adam J. Stewart1-4/+6
2019-10-10Add readline 8.0 (#13095)Adam J. Stewart1-1/+3
2019-10-10gdbm: https -> http (#13096)Adam J. Stewart1-1/+2
2019-10-10ncurses: https -> http (#13097)Adam J. Stewart1-1/+2
2019-10-10Add sqlite 3.30.0 (#13098)Adam J. Stewart1-0/+1
2019-10-10hypre: add compatibility patch for petsc/mfem build failures (#13116)Satish Balay2-0/+13
2019-10-10Added new versions to py-tornado (#13080)wspear1-1/+3
* Added new versions to py-tornado * Removed all but the latest new version
2019-10-10py-line-profiler: add 2.1.2, re-run cython if needed (#13102)Matthias Wolf1-1/+14
* py-line-profiler: add 2.1.2, re-run cython if needed See rkern/line_profiler#166. * Update var/spack/repos/builtin/packages/py-line-profiler/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-09libfabric: new upstream release 1.8.1 (#13053)Rob Latham1-0/+2
2019-10-09Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X (#13078)wspear1-1/+10
* Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X * Added missing dependencies
2019-10-09Added latest versions to py-traitlets (#13079)wspear1-1/+4
* Added latest versions to py-traitlets * Added missing dependencies
2019-10-09Add new versions of py-maestrowf (#13081)Francesco Di Natale1-2/+7
* Addition of 1.1.3 and 1.1.4 * Addition of conditional enum-34 installation. * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Addition of versioning for pyyaml. Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Addition of enum34 back to older versions 1.1.3 and below.
2019-10-09qt: Add 5.13.1 and missing zlib flags (#13109)Michael Kuhn1-1/+5
2019-10-09mysql: Add missing dependencies (#12717)Michael Kuhn1-2/+5
This also changes the default for cxxstd from 98 to 14 because (at least) newer versions of mysql do not compile with 98 (tested with gcc@9).
2019-10-08perl-perlio-gzip: add zlib dependency. (#13060)Toyohisa Kameyama1-0/+6
2019-10-08psmc: add zlib dependency. (#13061)Toyohisa Kameyama1-0/+2
2019-10-08seqprep: add zlib dependency. (#13062)Toyohisa Kameyama1-0/+2
2019-10-08tabix: add zlib dependency. (#13064)Toyohisa Kameyama1-0/+1
2019-10-08Added py-certipy package. Dependency of py-jupyterhub. (#13068)wspear1-0/+19
* Added py-certipy package. Dependency of py-jupyterhub. * Changed url to pypi
2019-10-08QMCPACK Oct2019 fix buglets (#13069)Nichols A. Romero1-5/+11
* Support different CMake build types correctly. * LIBXML2 variables no longer used. * Fix E501 as part of https://github.com/spack/spack/pull/13069
2019-10-08Fixed hash of version .0.5 and added latest version (.0.7.1) (#13077)wspear1-2/+3
2019-10-08Build older openfoam (#13071)Mark Olesen2-19/+18
* adjust building of OpenFOAM 1806 and earlier - spack now unpacks into spack-src, but earlier OpenFOAM versions still expect particular directory names (eg, OpenFOAM-v1806). Resolve by creating a symlink during patching. * replace openfoam 1806 patch with URL version
2019-10-08Added py-pamela package. Dependency of py-jupyterhub. (#13075)wspear1-0/+17
2019-10-08Add headsup note re cryptsetup patch for v2.2.2 (#13076)George Hartzell1-0/+4
2019-10-08pmdk: added v 1.7 (#13067)Phil Carns1-0/+1
2019-10-07py-apipkg: Fix mix up of checksums (#13066)Oliver Breitwieser1-2/+2
Change-Id: Ibae329c5a6cf7e3741a879612da523e11e3b0ab9
2019-10-07watch: added new package (#13044)Adam J. Stewart1-0/+49
2019-10-06Added go 1.13.1 and 1.12.10 (#12977)Paul1-0/+2
2019-10-06gnuplot: add 5.2.7 and fix qt dep (#13058)Denis Davydov2-1/+3
2019-10-06freeimage: new package (#13049)Matthias Wolf2-0/+40
* freeimage: new package * Address comments. * Whitespace
2019-10-06unrar: Add package (#12908)Ruben Di Battista1-0/+31
2019-10-06Add missing py-contextlib2 (#13056)Oliver Breitwieser1-0/+20
Change-Id: I8e0a90d4aa2c9f46230a6fe35ce5f4fa44672faf
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