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2022-08-25[ycsb] fixes build process and installation of YCSB (#32213)Matthieu Dorier1-15/+39
* [ycsb] fixes build process and installation of YCSB * [ycsb] fixing style * [ycsb] removed extra newline
2022-08-25New package: glab (#32251)Wileam Y. Phan1-0/+23
2022-08-25ddt: Initial commit (#32338)robgics1-0/+33
* ddt: Initial commit * ddt: Minor change to license date to appease the CI gods * Get rid of unattractive extra line * Switch to sha256 instead of md5
2022-08-25Adding e3sm-kernels to Spack (#32341)Robert Pavel1-0/+57
* Initial Draft of E3SM-Kernels Spackage Initial draft of E3SM-Kernels. Currently no support for nested_loops due to build system limitations * Style Check and Fixed gfortran Check Fixed style issues and changed gnu toolchain check to a gfortran check due to hybrid compilers (e.g. clang+gfortran) * Fixed Style Issues
2022-08-25lammps: added build dependency to py-setuptools (#32351)Lucas Frérot1-0/+1
LAMMPS' setup.py uses setuptools as of lammps/lammps@2ed8e5cf022
2022-08-25Add patch for missing template instantiation in pika 0.7.0 on macOS (#32370)Mikael Simberg1-0/+7
2022-08-25tixi: new variants (fortran,shared) (#32356)Melven Roehrig-Zoellner1-0/+13
* tixi: new variants (fortran,shared) Since some tixi 3 versions, additional CMake flags are needed to build tixi with shared libraries, respectively with Fortran support. * tixi: fix style
2022-08-25snap-berkeley: update to version 2.0.1 (#32358)snehring1-9/+6
2022-08-25fish: adding v3.5.1 (#32362)Tyler Funnell1-1/+2
2022-08-25libfabric: adding missing dep for opx fabric (#32377)snehring1-0/+1
2022-08-25Changes for ROCm-5.2.0 changes and new recipe rocwmma (#31667)Sreenivasa Murthy Kolam4-11/+148
* Changes for ROCm-5.2.0 changes and new recipe rocwmma * modify the maintainers for hipify-clang * address review comments * update the rocwmma new recipe as per latest syntax * fix style errors * modify the patch file to provide the details about the patch * fix style errors
2022-08-25Python: add new maintainer (#31755)Adam J. Stewart2-2/+2
2022-08-25libfabric: Match main version. (#32342)H. Joe Lee1-5/+5
* Match main version. `develop` no loger exists. * Change develop to main.
2022-08-25cplex: add package.py (#32337)robgics1-0/+77
* cplex: add package.py * Update var/spack/repos/builtin/packages/cplex/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-25Update ESMF: bug fix for esmf@8.3.0b09 with PIO (#32360)Dom Heinzeller1-1/+13
2022-08-25py-pynn: add version 0.10.0 (#32307)Christian Mauch1-2/+12
2022-08-24whizard: Fix passing of build options, update versions (#32326)Graeme A Stewart1-0/+4
* whizard: Fix passing of build options, update versions The dependency of whizard on libtirpc is now correctly passed down as an autotools option. Update known versions of package with 3.0.2 and 3.0.3. * Express path to headers via spec object methods
2022-08-24fujitsu-fftw: add option for enabling thread support (#31426)otsukay1-0/+6
Co-authored-by: Yuichi Otsuka <otsukay@riken.jp> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: otsukay <otsukay@users.noreply.github.com>
2022-08-24process-in-process: overhaul package recipe (#32347)Atsushi Hori1-118/+134
2022-08-23New package: py-mkdocs-material-extensions (#32334)Ryan Marcellino1-0/+19
2022-08-23New package: py-griffe and new build backend: py-pdm-pep517 (#32335)Ryan Marcellino2-0/+40
* New package: py-griffe and new build backend: py-pdm-pep517 * add pdm to build backend docs
2022-08-23add conduit 0.8.4 release (#32343)Cyrus Harrison1-0/+1
2022-08-23minc-toolkit: add runtime flex dependency (#32345)Ben Darwin1-1/+1
Some programs such as `minccalc` depend on libfl.so at runtime.
2022-08-23[WRF] Version update to 4.4 (#32046)Timothy Brown3-2/+84
* [WRF] Update to version 4.4. * [WRF] Patches for v4.4. * Fixing style. * [@spackbot] updating style on behalf of t-brown
2022-08-23Add new package for MUST runtime correctness analysis tool (#32329)Jim Galarowicz1-0/+106
* Add new package for MUST runtime correctness analysis tool * Fix encryption to SHA256 to fix with spack convention.
2022-08-23New package: py-pyyaml-env-tag (#32333)Ryan Marcellino1-0/+20
2022-08-23cpu-features: fix fetch failure (#32325)iarspider1-1/+2
* cpu-features: fix fetch failure `master` branch was renamed to `main` * Update var/spack/repos/builtin/packages/cpu-features/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-23intel-oneapi-compilers-classic: fix paths (#32305)Robert Cohn1-1/+7
* Fix intel-oneapi-compilers-classic bin path * Update package.py * intel-oneapi-compilers-classic fix path Co-authored-by: OfirGan <offirgan@gmail.com>
2022-08-23minc-toolkit: add MINC_TOOLKIT environment variable at runtime (#32331)Ben Darwin1-0/+3
This variable is used by some programs both internal and external to the toolkit itself to discover shared objects, data, etc.
2022-08-23py-scipy: Fortran compiler specify code is change to setup.cfg for Fujitsu ↵Toyohisa Kameyama1-6/+7
compiler (#32142) * py-numpy: Change Fortran detect order for Fujitsu Compiler. * create setup.cfg instead of command line.
2022-08-23New package: py-loguru (#32074)Jen Herting1-0/+25
* [py-loguru] New package * [py-loguru] Removed commented out line * [py-loguru] Added types removed extra dependencies * [py-loguru] missing windows dependency. listing windows as a conflict for now * [py-loguru] depends on py-colorama when platform=windows * [py-loguru] flake8 * [py-loguru] Import update * [py-loguru] - python is a runtime dependency - setuptools is a build dependency * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23New package: py-python-javabridge (#32075)Jen Herting1-0/+21
* [py-python-javabridge] New package * [py-python-javabridge] Added dependencies * [py-python-javabridge] Added types * [py-python-javabridge] py-setuptools and java are dependencies * [py-python-javabridge] Import update * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23libfabric: new versions (#32083)Martin Pokorny1-1/+5
* libfabric: add new versions 1.15.0, 1.15.1, main (previously named master) * Add OPX fabric option, with conflict for versions before v1.15.0 Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-23SDK: Quick fix to allow SDK to build with HIP (#32321)kwryankrattiger1-1/+5
2022-08-23Add cxxstd flag to googletest and default mock to true (#32171)Seth R. Johnson2-17/+23
2022-08-23Geant4: update cmake defines and add support for nvhpc (#32185)Seth R. Johnson1-17/+27
* geant4: use define function * geant4: Change new feature from conflicts to when * geant4: add support/conflicts for nvhpc * fixup! geant4: add support/conflicts for nvhpc
2022-08-23remove compiler optimize level limit of O2 for GCC (#32303)Zhilin Zheng1-5/+0
gfortran can make it with O3, it might be better to remove this limitation.
2022-08-23acts: add new dependency on vecmem and autodiff (#26790)Wouter Deconinck1-3/+9
Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2022-08-23Constrain `__skip_rocmclang` workaround in pika package (#32208)Mikael Simberg1-1/+1
2022-08-23ampl: Add new version and add variants for more install control. (#32317)robgics1-6/+37
2022-08-23eospac: support intel-classic@2021 (#32323)Daryl W. Grunau5-0/+76
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2022-08-23py-jupytext: add v1.14.1 (#32313)Ryan Marcellino1-1/+3
2022-08-23Kokkos: ROCm and CUDA are not compatible in Kokkos (#32181)kwryankrattiger1-0/+1
2022-08-23New package: py-mergedeep (#32322)Ryan Marcellino1-0/+19
2022-08-23New package: py-pymdown-extensions (#32324)Ryan Marcellino1-0/+20
2022-08-22Automated deployment to update package flux-core 2022-08-23 (#32320)Vanessasaurus1-1/+2
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-08-22Update ESMF from JCSDA/NOAA-EMC spack fork (esmf@8.3.0 with external ↵Dom Heinzeller1-33/+74
parallelio) (#32222) * Update ESMF package from JCSDA/NOAA-EMC spack fork * Update var/spack/repos/builtin/packages/esmf/package.py Fix url_for_version Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * [@spackbot] updating style on behalf of climbfuji Co-authored-by: Jim Edwards <jedwards@ucar.edu> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: climbfuji <climbfuji@users.noreply.github.com>
2022-08-22sundials: add v6.3.0 and logging-mpi variant (#32315)Cody Balos1-0/+10
2022-08-22New package: py-ghp-import (#32316)Ryan Marcellino1-0/+19
2022-08-22gaudi: consistent test dependencies when +examples (#32134)Wouter Deconinck1-1/+11
* gaudi: consistent test dependencies when +examples Gaudi requires testing to be enabled for examples to be built, so all test dependencies are also there for `+examples`. This PR fixes a missing pytest dependency when `+examples` is used but no testing is enabled. The construct with the loop is to ensure the identical dependencies are always used, even as version ranges my start to differ. Testing with gaudi_add_tests was added in v35r0. Some nosetests and QMtests were in the tree before, but not accessible it seems. The effective dependency since 35.0 is also applied for pytest, extending the range that was there before disentangling `optional`, at https://github.com/spack/spack/blob/9d67d1e0346203a20b7ba44940061da855d405ca/var/spack/repos/builtin/packages/gaudi/package.py * gaudi: version 36.7 in other PR...