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2019-06-07add openmp variant to lammps (#11643)Jeffrey Salmond1-1/+5
* add openmp variant to lammps * add conflict for %gcc@9: and +openmp
2019-06-06added tix package and python variant for tix (#11599)Gregory Lee4-2/+58
* added tix package and python variant for tix * addressing tix review requests * python +tix requires +tkinter
2019-06-06bugfix: lua-luafilesystem package should use stage.source_path (#11648)Todd Gamblin1-2/+1
2019-06-05nettle: fix broken build (#11611)Justin S1-0/+3
* nettle: force C99 build * nettle: update to use c99_flag from @alalazo Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2019-06-05lammps: added v20190605 (#11638)Christoph Junghans1-0/+1
2019-06-05libxpm: revert change made in unrelated PR (#11634)Patrick Gartung1-3/+3
2019-06-05set GUILE env var when building gnutls, fixes issue #11601 (#11607)Gregory Lee1-0/+7
2019-06-04Add Google Benchmark version 1.5.0 (#11626)Andrew Gaspar1-1/+3
2019-06-04Revert "Git: patch to make git relocatable with buildcache. (#11596)" (#11625)Patrick Gartung2-58/+0
This reverts commit 30ec13f37584ad2934ecdf5a4e86d93d35b3a76c.
2019-06-04Buildcache relocate.py error fix (#11616)Patrick Gartung2-5/+3
* Add a trailing / if file --mime does not return a mimetype with a / in it * Flake8
2019-06-04hotspot: new package at 6.0 (#11610)Justin S1-0/+21
2019-06-03mesa: Revert updated meson build and restore autotools build (#11595)Chuck Atkins4-130/+68
Due to the large number of issues this migration has caused, this rolls back to the older autotools build. However, it still keeps the updates wrt variants and virtual packages.
2019-05-31Git: patch to make git relocatable with buildcache. (#11596)Patrick Gartung2-0/+58
* Apply patch to git to make it search for config files from its current location instead of the locations hard coded at install. * Add provenance info for patch * Pass needed flags to make * Environment variables need because of relocation
2019-05-31Package/tau/tau 2.28.1 update (#11591)sameershende2-2/+14
* Updating the TAU package with 2.28 and public repo * Cleaning up TAU package and fixing binutils to install extras The extras variant will install the extra ELF headers needed by the TAU package. The TAU package has been cleaned up and extended. * Adding some comments to the changes in binutils * Adding correct python support, finding include and lib paths. * Added PDT 3.25.1. * Added TAU v2.28.1 with libdwarf and libelf. * When +libdwarf is activated, +libelf is not automatically activated. It checks separately for libelf.
2019-05-30alan: new package at 2.1.1 (#11593)Justin S1-0/+19
2019-05-30Adds the aml memory management library. (#11590)Valentin Reis1-0/+21
AML is a collection of building blocks for explicit memory management on complex architectures. https://xgitlab.cels.anl.gov/argo/aml https://argo-aml.readthedocs.io/en/latest/
2019-05-30r-randomglm: new package at 1.02-1 (#11589)Justin S1-0/+21
2019-05-30Revbayes update (#11559)Nick Booher1-3/+6
* revbayes: new version * revbayes: pep8
2019-05-30mathematica: new package at 12.0.0 (#11509)Justin S1-0/+39
* mathematica: new package at 12.0.0 * mathematica: add missing os import * mathematica: fix url format
2019-05-29precice: add version 1.5.0 (#11577)Frédéric Simonis1-0/+1
2019-05-29Xrootd: set PYTHON_EXECUTABLE with +python variant (#11581)Patrick Gartung1-0/+5
* Xrootd: set PYTHON_EXECUTABLE with +python variant When building with python3 PYTHON_EXECUTABLE needs to be set for deprecated FindPythonInterp to work as expected. * Add comment * Flake8 * More flake8 * Update package.py * typo
2019-05-29ROOT: set PYTHON_EXECUTABLE (#11583)Patrick Gartung1-2/+2
Per @adamjstewart use spec['python'].command.path
2019-05-29py-flye: new package at 2.4.2 (#11584)Justin S1-0/+18
* py-flye: new package at 2.4.2 * py-flye: better python version constraint
2019-05-29ROSE: add version 0.9.10.0, update to Autotools, add variants (#9484)Justin Too2-52/+248
* Also add versions 0.9.9.104, 0.9.9.52, 0.9.9.0, and 'develop' * Replace version 0.9.7 with 0.9.7.0 * Update Rose to be an Autotools package * Update boost dependency to 1.60.0 or later (previously 1.47.0) * Add EDG binary identifiers for ROSE versions installing from archives (rather than git) * Add variants for mvapich2 backend, c++11, debug symbols, optimization, and ROSE-based projects (codethorn, autopar, and polyopt) * Remove patch add_spack_compiler_recognition
2019-05-29New versions and bugfixes for the ACTS package (#11578)Hadrien G1-3/+11
* Improve C++ standard computation in ACTS package * Use a more clever strategy for aligning ACTS cxxstd with ROOT cxxstd * Add new ACTS releases * ACTS is not compatible with the new Boost CMake build system yet * Explain why Boost 1.70 does not work currently
2019-05-29Add LSF dependency for OpenMPI (#11532)Dustin Wheeler2-0/+26
* Add LSF package, which cannot be installed by Spack and must be system-installed. The package install will fail if no external LSF is registered in packages.yaml (LSF may not be installed in a well-known location and the external entry helps Spack locate it for dependents). * Add LSF dependency to OpenMPI when schedulers=lsf is chosen
2019-05-29Add newer Google Benchmark version (#11580)Patrick Gartung1-0/+1
2019-05-29ROOT: Set PYTHON_EXECUTABLE with +python variant (#11579)Patrick Gartung1-0/+5
* ROOT: Set PYTHON_EXECUTABLE with +python variant After cmake v3.12 FindPythonInterp used by llvm subsystem is deprecated. Setting -DPYTHON_EXECUTABLE=path_to_python fixes this error: 1 error found in build log: 118 -- Doxygen disabled. 119 -- Go bindings disabled. 120 -- LLVM host triple: x86_64-unknown-linux-gnu 121 -- LLVM default target triple: x86_64-unknown-linux-gnu 122 -- Building with -fPIC 123 -- Found PythonInterp: /usr/bin/python2.7 >> 124 CMake Error at interpreter/llvm/src/CMakeLists.txt:613 (if): 125 if given arguments: 126 127 "VERSION_LESS" "2.7" 128 129 Unknown arguments specified 130 * Flake8 * Update var/spack/repos/builtin/packages/root/package.py Co-Authored-By: Javier Cervantes <javiercvilla@gmail.com>
2019-05-29vtkm: fix the directory cmake looks for the source code (#11576)Kenneth Moreland1-2/+1
Previously, the vtkm package was adding a "../" option to the cmake command line. I suppose this was supposed to be pointing to the source code, but did not. Rather, Spack correctly adds the source directory as the first argument to cmake. However, because ../ was added, it used that as the source directory instead. Simply remove this argument to make CMake work correctly.
2019-05-28Catch: 2.8.0 (#11570)Axel Huebl1-0/+1
Add the latest Catch2 release.
2019-05-28GnuTLS by default depends on Guile, added a guile variant. Updated GnuTLS to ↵mathsen1-0/+8
3.6.8 (#11571)
2019-05-28petsc: add version 3.11.2 (#11572)Satish Balay1-0/+1
2019-05-28dealii: add 9.1.1 (#11573)Denis Davydov1-0/+1
2019-05-28Add support for new unittest-cpp package (#11575)Daryl W. Grunau1-0/+21
* bump eospac version * Revert "bump eospac version" This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da. * Add support for new package: unittest-cpp
2019-05-26r-geomorph: new version (#11556)Levi Baber1-1/+2
2019-05-26Add a new version for gnutls. (#11546)健美猞猁1-0/+2
* Update URL and add a new version. * Fix flake8 issues. * Remove newly-added duplicate url_for_version.
2019-05-26py-markdown: new version (#11548)Levi Baber1-1/+5
2019-05-26Add new versions for intel-mkl-dnn. (#11549)健美猞猁1-1/+4
* Add new versions for intel-mkl-dnn. * Remove the last trailing line. * Update url and set 0.19 as preferred.
2019-05-26r-emmli: new package (#11557)Levi Baber1-0/+18
2019-05-26Update GnuPG and associated packages (#11564)Olaf Mersmann4-1/+6
* libassuan: Update to v2.5.3 * gnupg: Update to v2.2.15 * libgpg-error: Update to v1.36 * libgcrypt: Update to v1.8.4
2019-05-26New Package: sl (#11565)Axel Huebl1-0/+25
Add the sl program.
2019-05-26xsdk@0.4.0: update dealii defaults wrt changes in a973ab475 (#11562)Satish Balay1-2/+2
wrt xsdk@develop - ginkgo requires openmp - so disable until we can add openmp dependencies consistantly
2019-05-24mbedtls: add pic variant (#11558)Mark W. Krentel1-1/+15
Add variant 'pic' for including in shared libraries. Add build dependency on perl. Compiling mbedtls runs several perl scripts. Add versions 2.7.10 and 2.16.1, the heads of the two main stable branches.
2019-05-24Update libensemble to v0.5.0 (#11544)Stephen Hudson1-3/+5
2019-05-24Add nettle@3.4.1 (#11547)健美猞猁1-0/+1
2019-05-24build env: simplify handling of parallel jobs (#11524)Massimiliano Culpo2-2/+7
This PR implements several refactors requested in #11373, specifically: - Config scopes are used to handle builtin defaults, command line overrides and package overrides (`parallel=False`) - `Package.make_jobs` attribute has been removed; `make_jobs` remains as a module-scope variable in the build environment. - The use of the argument `-j` has been rationalized across commands - move '-j'/'--jobs' argument into `spack.cmd.common.arguments` - Add unit tests to check that setting parallel jobs works as expected - add new test to ensure that build job setting is isolated to each build - Fix packages that used `Package.make_jobs` (i.e. `bazel`)
2019-05-24Updated lmod (to version 8.1.5) and associated dependencies (#11552)Massimiliano Culpo3-8/+22
Lmod version 8.1.5 Lua version 5.3.5 Lua Filesystem 1.7.0.2 Turned tcl to a link dependency so that Lmod's configure can find it.
2019-05-23Add latest version of py-cython (#11494)Adam J. Stewart1-5/+21
* Add latest version of py-cython * Fix cython unit tests
2019-05-23LIBXSMM 1.12.1 (#11538)Hans Pabst1-26/+27
2019-05-22Add cppcheck version 1.87. (#11536)Jon Rood1-0/+1
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