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2023-06-14Repeatmodeler 2.0.4 (#38337)snehring2-31/+69
* perl-devel-size: adding new package * repeatmodeler: adding new version 2.0.4 * perl-devel-size: adding proper description
2023-06-14dssp: convert to new stand-alone test process (#38368)Tamara Dahlgren1-10/+6
2023-06-13SU2: add versions up to 7.5.1, update dependencies (#37767)kjrstory2-0/+67
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-13add DLA-Future package (#38224)Raffaele Solcà1-0/+135
2023-06-13NWChem: fix fftw3 variant + patch (#38250)Edoardo Aprà2-0/+654
2023-06-13modules: append trailing delimiter to MANPATH when set (#36678)Xavier Delaruelle3-0/+49
Update modulefile templates to append a trailing delimiter to MANPATH environment variable, if the modulefile sets it. With a trailing delimiter at ends of MANPATH's value, man will search the system man pages after searching the specific paths set. Using append-path/append_path to add this element, the module tool ensures it is appended only once. When modulefile is unloaded, the number of append attempt is decreased, thus the trailing delimiter is removed only if this number equals 0. Disclaimer: no path element should be appended to MANPATH by generated modulefiles. It should always be prepended to ensure this variable's value ends with the trailing delimiter. Fixes #11355.
2023-06-12justbuild: bump version 1.1.2 (#38320)Alberto Sartori1-0/+1
2023-06-12curl: add v8.1.2 (#38332)Alec Scott1-0/+1
2023-06-12Update sp package (#38208)Alex Richert1-2/+20
2023-06-12cpp-httplib: add v0.12.5 (#38331)Alec Scott1-0/+1
2023-06-12direnv: add v2.32.3 (#38333)Alec Scott1-0/+1
2023-06-12etcd: add v3.5.9 (#38334)Alec Scott1-0/+1
2023-06-12fastp: add v0.23.4 (#38335)Alec Scott1-0/+1
2023-06-12opencascade: new variants (#35345)Wouter Deconinck1-30/+107
* opencascade: new variants OpenCascade has several major modules and not every application needs all of them. This adds variants for the various modules. It also uodatws the 3rdparty dependency treatment. * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py * opencascade: remove variant foundation_classes (always true) * [@spackbot] updating style on behalf of wdconinc * Update var/spack/repos/builtin/packages/opencascade/package.py --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-06-12mercury: add v2.3.0 (#38279)Jerome Soumagne1-13/+9
* fix Boost dependency * fix testing and move psm2/sockets as unsupported * fix style to separate maintainers/tags/version
2023-06-12mvapich2: add hwloc_graphics variant (#38028)MatthewLieber1-1/+5
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-06-12neko: add v0.6.0 and fixed rocm package recipe (#38024)Niclas Jansson1-1/+4
2023-06-12mochi-margo: correct patch versions (#38087)willdunklin1-1/+1
2023-06-12Add new Kokkos release (#38049)Bruno Turcksin1-0/+1
2023-06-12Deprecate R packages for spatial analysis (#38158)Adam J. Stewart3-22/+110
* Deprecate R packages for spatial analysis * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-12libtlx: add v0.6.1 (#38134)Alec Scott1-0/+1
2023-06-12ccache: add v4.8.1 (#38114)Alec Scott1-0/+1
2023-06-12cdhit: add missing perl dep, patch shebangs (#38179)snehring2-0/+30
2023-06-12wrf: add v4.5.0 (#37618)MichaelLaufer3-2/+78
2023-06-12whizard: add tirpc/lib to the link flags (#38050)Juan Miguel Carceller1-2/+2
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-12gdb: fix debuginfod for version 10 (#38058)Manuela Kuhn1-1/+1
2023-06-12kokkos: fix c++20 constraint (#37555)Martin Pokorny1-1/+1
2023-06-12FrontISTR: relax the requirement on Trillinos (#38321)nkgh771-1/+1
2023-06-12podio: bump minimal version of catch2 (#38255)Thomas Madlener1-1/+2
2023-06-12DaV: Use VTKm for all build configurations of ParaView (#38184)kwryankrattiger1-1/+2
2023-06-12superlu: new version 6.0.0 (#38262)Wouter Deconinck1-1/+6
No changes to build system required. Changelog: https://github.com/xiaoyeli/superlu/compare/v5.3.0...v6.0.0 Since this new version adds "64-bit indexing support", and since at least one dependent package (`armadillo`) requires "32-bit integers" (https://gitlab.com/conradsnicta/armadillo-code/-/commit/faa6cbf895ba6f526473ed48779685919b36aa9f), the previous version remains preferred. * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-06-12gaudi: remove the py-qmtest dependency (#38274)Juan Miguel Carceller1-6/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-12orthofinder: add 2.5.5, add variants (#38298)George Young1-1/+23
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-12fastq-screen: add 0.15.3, add variants (#38288)George Young1-6/+21
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-12ltr-retriever 2.9.4 (#38300)snehring2-1/+38
2023-06-12perl-libwww-perl: adding perl-clone dependency (#38301)snehring1-0/+1
2023-06-12alglib: add v4.00.0 (#38313)Alec Scott1-0/+1
2023-06-12blogbench: add v1.2 (#38316)Alec Scott1-0/+1
2023-06-12consul: add v1.15.3 (#38317)Alec Scott1-0/+1
2023-06-11py-mypy: add 1.3.0 (#38286)Manuela Kuhn1-0/+2
* py-mypy: add 1.3.0 * Remove redundant py-typed-ast dependency * Read python@3.7 dep
2023-06-11py-deeptools: add 3.5.2, update dependency versions (#38287)George Young1-5/+7
* py-deeptools: add 3.5.2, update dependency versions * Update var/spack/repos/builtin/packages/py-deeptools/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update var/spack/repos/builtin/packages/py-deeptools/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Rearranging dependencies to match setup.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-06-11py-jedi: add 0.18.2 (#38177)Manuela Kuhn1-13/+7
* py-jedi: add 0.18.2 * Add setuptools as run dependency
2023-06-11py-multidict: add 6.0.4 (#38284)Manuela Kuhn1-4/+4
2023-06-11py-mne: add 1.4.2 (#38228)Manuela Kuhn1-0/+1
2023-06-11Gxsview new version 2023.05.29 (#38310)Olivier Cessenat1-0/+3
* netpbm: new version 10.73.43 * gxsview: new version 2023.05.29
2023-06-11[py-spacy-legacy] New package (#38276)Jen Herting1-0/+18
2023-06-11[py-spacy-loggers] new package (#38275)Jen Herting1-0/+18
2023-06-11[py-langcodes] new package (#38273)Jen Herting1-0/+18
2023-06-11py-nbclassic: add 1.0.0 and py-notebook-shim: add 0.2.3 (#38289)Manuela Kuhn2-4/+5
2023-06-11New version for openCARP packages, v13.0 (#37940)Marie Houillon4-16/+36
* New version for openCARP packages * Update carputils dependencies * Update types of openCARP dependencies * Add type "run" to setuptools dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add package py-common as carputils dependency * Add setuptools dependency for py-common * Remove spaces on blank line * Restrict type of dependency setuptools to "build" Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: openCARP consortium <info@opencarp.org> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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