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* add mofem-cephas package
* add mofem fracture module
* add user modules build and fracture modyle
* add minimal surface module
* add slepc variant
* bump mofem core lib version
* bump mofem core lib version
* bump version
* fix bug
* set upper bound to petsc version and other chanes
* fix indentation
* add minimal med file installation
* chcekc with flake8 and installation with spack packages
* add variants to med package
* upper bound to adol-c and remove obsolete internal package install
* fix basic module install
* module install from external source in extended prefix
* remove obsolte code and reverse to variant doxygen
* fix git adress
* improve packaging for mofem users modules
* fix flake8
* move dependencies after variants
* move root_cmakelists_dir right before cmake_args
* remove unused variants
* use append for single element
* replace root_cmakelists_dir
* use install_tree instead copy tree
* simplify code
* remove phase and mkdirp
* add run tests
* instal ext modules to ext_users_modules directory
* move version below url
* simplify directory name
* use underscore in variant name
* remove unused variable
* fix link to blas libs
* add missing boost dependence
* fix problem with copying module source code
* change variant name form doxygen to docs
* add expanded description
* make installation consistent with spack
* fix flake8
* make extensions installed
* code comments and minor corrections
* make slepc variant false by default
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* votca: add more deps
* Update package.py
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* r-qorts: Create new package.
* Change dependency to java, change package name.
* Remove some join_path.
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* New package: Verrou, a floating point error checker
* Clean up usage of patch
* Account for future patches in version ranges
* Manual call to autogen is not needed anymore, but extra dependencies are needed
* Use trick from automake to evade shebang length limit
* Use a glob instead of an explicit file list
* Turns out conflict() does not do what I want...
* Suggestions from @citibeth reviews
- Use 'develop' convention for the master branch
- Prefer tarballs over git repositories
- Increase robustness against default configuration
* Drop a couple of older releases with a different patching procedure
* Playing coding style golf
* Various bug squashing
- Missed master -> develop substitution
- Turns out manually calling autogen.sh is needed after all
- Missed + in spec
* More style golfing to fit in 80 columns
* Remove unnecessary mention of the develop branch
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* py-pytest: Added dependency on py-setuptools-scm, as well as py-setuptools, to prevent the build from silently installing its own copy of setuptools-scm
* py-pytest: Dependency on setuptools-scm only needs to be 'build'
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would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748)
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type=test, to prevent setuptools from silently installing its own copy of nose (#8749)
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* openmpi: add c++ exceptions cfg option variant
* address review comments
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* py-pyqi: new package
* py-pyqi: cleanup
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* The xlf_seacas.patch fails on the latest trilinos develop branch so confine it up to version 12.12.1.
* Fixing likely mistak in seacas patch version range.
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Fixes #8036
Before this PR Package.installed was returning True if the spec prefix
existed, without checking the DB. This is wrong for external packages,
whose prefix exists before being registered into the DB. Now the property
checks for both the prefix and a DB entry.
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* fftw: version bump
* fftw: add gcc-8 conflict for v3.3.7
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(#8722)
* Add fix for bug causing build failure when hdf5 enabled
* Added correct hdf5 dependency to typhonio
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* r: add memory profiling variant
* r: change memory_profiling to underscores
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* aspera-cli: a new package.
* flak8.
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This allows building MPI applications on top of charm/AMPI without
to specify another backend.
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* Charm: more info about build targets
* fix whitespace
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* Charm: provide MPI
* add mpicc wrappers
* clarify MPI comment
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* Unset F90 in mvapich2 when using intel compilers.
* Fixing typo.
* Unset F90 and F90FLAGS for mvapich2 at all times.
* Adding comment.
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Prevent this error:
metis_graph_part.c:301:7: error: non-void function 'METIS_PartGraphVKway' should return a value
[-Wreturn-type]
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* modified: package.py
* deleted: var/spack/repos/builtin/packages/py-numexpr/numexpr-2.6.5.tar.gz
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* new file: var/spack/repos/builtin/packages/py-backcall/package.py
* Update package.py
* Update package.py
* Update package.py
* Update package.py
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* flang: add support for llvm-6
* flang: review changes
* pgmath: make flake8 happy
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* initial version of the package pyTorch (#171)
* adding version 0.4
* flake8 correction
* reordering version, removing run dependecies
* Changing depends_on type to default
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* mitofates: more deps and a patch to make it functional
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