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* Add gawk, GNU awk.
* flake8 fix.
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* Add package for fastqc
This tool is a java mess. Their Way To Do It is to just copy the entire
tree into it's final resting place, make the perl script at the top
level executable and take it from there.
Yuck.
This package assumes that `set_executable` actually sets all the user
bits. If that change doesn't go in, then something equivalent needs to
be done.
* Use chmod to make fastqc executable
I haven't gotten any feedback on changing set-executable, so switch to
using chmod (from the cuda package).
* Flake8 cleanup
* Install files neatly, don't just copy top level of dir
Rather than blindly copying everything in the distribution, carefully
put the necessary bits into reasonable places. Neatness counts, etc...
This requires patching the `fastqc` perl script, so this commit adds a
patch file.
* Additional pep8 cleanup
* Let dependency handle adding jdk to PATH
* Flake8 cleanup
* Ensure that java is on PATH
I thought that the run dependency on the jdk would put
java on my PATH, but it does not appear to work.
For now, do it by hand.
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AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage
* Updated Blitz++ to use customized make build and test targets
* Removed flake8 error
* Removed make test customization, added make install customization, need to figure out issues with multiple make targets
* Changed build_targets and install_targets to normal attributes
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* py-markdown: Add new package for python-markdown.
* py-markdown: Added restrictions on Python version.
* py-markdown: Removed upper-limit on compatible Python versions.
* py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
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* build fixes for openblas
* avx2 in openblas nnot supported with older gcc
* merge fix for openblas
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* graphviz: fixed build error due to specifying ltdl lib but not include.
* graphviz: Fixed dependencies on libtool and expat.
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* init nfft 3.3.2 package file
* shorten comment line
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options. (#2604)
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* Always default to +mpi
* Always default to ~X
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* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage
* MakefilePackage: changed default edit behavior
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Fixes #2554
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Texlive is *live*, they update the contents of their tarball on a whim.
Here's the current one.
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* Add python cdo support
* Correct pypi url
* Corrected a blanck space that was failing CI
* Corrected url that was failing CI
* Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis
* Added cdo package depency
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A couple of updates for python package.
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* Added support for xSDKTrilinos package
* Updated xsdktrilinos/package.py for PR review
* Added trilinos version # reqs to xsdktrilinos
* xsdktrilinos now uses CMakePackage
* Cleaned up xsdktrilinos/package.py
* Removed unused cxxflags from xsdktrilinos
* Removed unused sys import from xsdktrilinos
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* Add freetype dependency on bzip2
* Switch package with an install method for the docs
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* atlas: fix lapack stage path
* atlas: add a few links to other package managers
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* likwid: add todo
* liwkid: add a note on hwloc dependency
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Rename developer version, add new version, and make patch version
specific.
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* clang: do xcode mockup iff requested by a package
* add a note
* add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
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Main page states [3.3.1 is latest stable](http://eigen.tuxfamily.org/index.php?title=Main_Page).
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Source project page states [6.0.4 is latest stable](http://scotch.gforge.inria.fr/)
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Supports installing both a "known version" of PETSc/PFlotran that works and
the develop/master branches of both packages
Funded-by: IDEAS
Project: IDEAS/xSDK
Time: 4 hour
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* update flux dependencies and package
* refinements from @adamjstewart
* fix flux document generation
The docbook-xsl package has been added, and correctly configures catalog
files to generate documentation correctly with asciidoc.
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* astyle: do not set user/group when installing on macOS
* astyle: add new version
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otherwise petsc may pickup libX11 on login nodes during config/build,
but libX11 may not be available on computation nodes.
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* Added package 'uuid'.
* Added package 'cmor'.
* Updated 'cmor' and 'uuid': docstring formatting.
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* Add support for parsing R-XML URL versions.
* Better url-parse debug output.
- just print the debug stuff all the time.
* fix R-XML versions.
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* Update emacs: current release, use our x11 bits
Add checksum for 25.1 release.
Rework the X support:
- use Spack's X11 bits
- add ability to specify an X toolkit (gtk or athena, default is gtk).
- change toolkit names to align with Emacs' configure usage.
* PEP8 cleanups.
* glib dependency should not be type=build
I'd like to blame that on a typo, but it's a few too many characters
for that to be viable. I'm not sure what I was thinking.
* Pass X variant down: emacs->pango->cairo
* X variants default to False, warn on bad toolkit
Change the X variants for emacs, pango and cairo to default to False.
Check that the toolkit is a valid choice and give a reasonable error if
not.
* Fix flake8 issue, reword warning text
* gtkplus needs to use +X variant for pango to work
In order for a useful variant of pango to be built into the spec I
needed to make the dependency on gtkplus explicitly specify it's X
variant. The X variant is the default, but that wasn't enough to make
it happy. Since it's happiness is the most imporant thing in the
world, this change! :)
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