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2017-03-04Allow find_libraries to accept lists or strings (#3363)Adam J. Stewart8-15/+15
* Allow find_libraries to accept lists or strings * Convert one more example from list to string
2017-03-04atlas: added a missing property decorator (#3366)Massimiliano Culpo1-0/+1
2017-03-04fix blas/lapack usage after PR 1875 (#3365)Denis Davydov3-20/+20
2017-03-04ADIOS: change subclassing from Package to AutotoolsPackage (#3230)serbanmaerean1-10/+7
* ADIOS: change the invocation of python script that generates test files The python script ADIOS*/utils/gpp/gpp.py is invoked directly in the ADIOS*/tests/genarray/Makefile and the name of the python interpreter can be quite long if it is one built under spack, i.e. longer than the 80 characters allowed by the #! line in bash. The name of the shbang line is truncated at 80 characters and bash cannot find the python interpreter specified. This fix changes how the script is executed, by invoking it under python. This way, the shbang line is ignored. * adios: fixed flake8 errors from previous commit. * adio: Switch to AutotoolsPackage class from Package class Switched in order to add support for the ppc64le platform.
2017-03-04Using fPIC in PERL when using an Intel compiler. (#3355)Jon Rood1-2/+7
2017-03-04Convert gl2ps to CMakePackage (#3360)Adam J. Stewart1-6/+33
* Convert gl2ps to CMakePackage * Remove unused spec variable
2017-03-04ncurses: Work around an awk bug (#3361)Erik Schnetter1-0/+3
2017-03-04correct ipython dependency (#3332)healther3-5/+52
* correct ipython dependency * needed to introduce a github download for py-jedi * corrected dependencies * restrict appnope dependency to darwin>10.8 * flake8 fix
2017-03-04add package py-junit-xml (#3336)healther1-0/+38
* add package py-junit-xml * Update package.py * flake8 fix
2017-03-03Added magma package (#3273)eklee152-0/+315
* Added magma package * Incorporated Serban's change * Removed cmake dependency
2017-03-03add package py-neo and py-quantities (#3337)healther2-0/+77
* add package py-neo and py-quantities * Update package.py * fixed errors
2017-03-03add package py-pyminifier (#3340)healther1-0/+36
2017-03-03add package py-serial (#3341)healther1-0/+36
* add package py-serial * fixed setuptools dependency
2017-03-03add package py-pyfftw (#3342)healther1-0/+41
* add package py-pyfftw * Update package.py
2017-03-03Revert "Make libgcc_s relocatable on Macos by adding @rpath to installname" ↵Adam J. Stewart1-11/+2
(#3349)
2017-03-03openblas: fix flags (#3344)Denis Davydov1-2/+2
2017-03-03features/highwayhash (#3242)Andrew Holler1-0/+62
* Adding highwayhash package from Google * Added the highwayhash package for Tensorflow * Fixed the numerous flake8 issues * fixed requested changes * added conditionals for some installs * forgot an import * create install directories before you install anything in them
2017-03-03add versions to package py-pandas (#3338)healther1-3/+5
2017-03-03scipy build fails when built in parallel (#3275)Adam J. Stewart1-1/+8
2017-03-03opencoarrays: Correct download url, update version (#3322)Erik Schnetter1-1/+2
2017-03-03Add package sga. (#3330)健美猫1-0/+61
2017-03-03add package py-lmfit (#3333)healther1-0/+38
* add package py-lmfit * needed to deactivate testing in openblas due to spec.cppflags being undefined * undid openblas modification
2017-03-03add package py-myhdl (#3335)healther1-0/+38
* add package py-myhdl * Update package.py
2017-03-03Fix simul by diabling inline and replacing mpicc command. (#3323)健美猫1-0/+2
2017-03-03add package py-elephant (#3302)healther1-0/+48
* add package py-elephant * add variants for docs and pandas
2017-03-03add resource manpages to package git (#3299)healther1-14/+90
* add resource manpages to package git * Update package.py * added manpages per version * added explaining comment * fixed synatx error
2017-03-03add flex variant to cscope (#3252)healther1-2/+9
* add flex variant to cscope * fixed dependency * fixed typo
2017-03-03Add package mdtest. (#3303)健美猫1-0/+43
2017-03-03Add package sctk. (#3325)健美猫1-0/+53
2017-03-03Add packag gradle. (#3326)健美猫1-0/+83
2017-03-03add package py-spyder (#3312)healther1-0/+55
* add package py-spyder * fixed dependencies * py-flake8 -> py-pycodestyle * fixed packagename * Update package.py * Update package.py
2017-03-03add package py-qtawesome (#3308)healther1-0/+39
* add package py-qtawesome requires py-qtpy * fixed url * remove unnecessary comment
2017-03-03add package py-qtpy (#3307)healther1-0/+37
* add package py-qtpy * (re)added qt dependence * changed url
2017-03-03add package py-numpydoc (#3311)healther1-0/+38
* add package py-numpydoc * removed unnecessary dependency * added dependency
2017-03-03Add a new version for bamtools 2.4.1. (#3328)健美猫1-0/+1
2017-03-03add package notmuch and dependencies (#3329)healther3-0/+116
* add package notmuch and dependencies depends on * gmime * flake8 again
2017-03-03add package gmime (#3327)healther1-0/+39
* add package gmime * flake8 fix..
2017-03-02Fixes to allow Boost to build with Python 3 (#3293)Adam J. Stewart2-3/+47
* Fixes to allow Boost to build with Python 3 * Restrict patch to Python 3 only
2017-03-02Add new package for PaGMO/PyGMO (#3210)Adam J. Stewart2-0/+120
* Add new package for PaGMO/PyGMO * Rename py-pygmo to pagmo * Fix concretization bug * Correct Python detection, use correct flags * Install PyGMO to the pagmo prefix, not the Python prefix
2017-03-02Ior package: fix build issues (#3276)Federico Padua1-1/+2
This commits address build issues reported in issue #3268. In particular, makes cleaner the dependency on parallel-netcdf when +ncmpi variant is requested and adds CFLAGS=-D H5_USE_16_API to handle the fact that Ior uses old 1.6 style APIs when +hdf5 is requested. These changes make Ior build fine and create modules for HDF5 versions 1.8.x and 1.10.0. Even though build is successfull the modules haven't been tested in a run.
2017-03-02Convert icu4c to AutotoolsPackage (#3316)Adam J. Stewart1-12/+10
2017-03-02Make libgcc_s relocatable on Macos by adding @rpath to installname (#1671)Patrick Gartung1-2/+11
* Make libgcc_s relocatable * spack specifies full path to lib64 * don't need trailing / * setting rpath is different on macos * add -headerpad_max_install_names linker options * formatting fixes * Add Adam's recommendation
2017-03-02add package py-jedi (#3313)healther1-0/+36
2017-03-02add package py-rope (#3314)healther1-0/+36
2017-03-02add various variants to vim (#3255)healther1-3/+21
* add various variants to vim * default to --enable-fail-if-missing * vim package: -{python,ruby,lua,perl} sets build option to `no` * vim's interpreter build options are `--enable-XXXXinterp={yes,no,dynamic}` * dynamic seems to work only on windows builds * `=no` is the default => use it in spack if the variant is disabled
2017-03-02add package py-chardet (#3310)healther1-0/+36
2017-03-02add package py-boltons (#3279)healther1-0/+41
* add package py-boltons * added description * fixed non-utf8 characters
2017-03-02Update adios to 1.11.1 (#3221)Michael Kuhn2-2/+20
Add a zfp variant and a patch that resets the interpreter for gpp.py.
2017-03-02add package py-brian (#3280)healther1-0/+38
* add package py-brian * fixed typo * removed unnecessary dependency * fixed typo2
2017-03-02Feature/py doxypy (#3283)healther1-0/+34
* add package py-doxypy * fixed template and url
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