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2023-03-07update SPERR package (#35810)Samuel Li1-7/+11
* update SPERR package * remove blank line * update SPERR package * remove blank line --------- Co-authored-by: Samuel Li <Sam@Navada>
2023-03-07py-pytorch-lightning: add v1.9.4 (#35791)Adam J. Stewart1-0/+1
2023-03-07py-pytorch-lightning: torch~distributed not supported in 1.9.0 (#35809)Adam J. Stewart1-0/+2
2023-03-07cloog: add v0.18.4 (#35849)Alec Scott1-0/+1
2023-03-07dnsmasq: add v2.89 (#35851)Alec Scott1-0/+1
2023-03-07sundials: add new version (#35796)Cody Balos1-0/+1
2023-03-07cmocka: add v1.1.7 (#35848)Alec Scott1-0/+1
2023-03-07apr: add v1.7.2, apr-util 1.6.3 (#35832)Alec Scott2-0/+2
* apr: add v1.7.2 * apr-util: add v1.6.3
2023-03-07awscli: add v1.27.84 (#35836)Alec Scott2-1/+4
* awscli: add v1.27.84 * Add botocore dependency to awscli * Update var/spack/repos/builtin/packages/awscli/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-botocore@1.29.84 dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07cget: add v0.2.0 (#35846)Alec Scott1-0/+1
2023-03-07bc: add v1.07.1 (#35844)Alec Scott1-0/+1
2023-03-07code-server: add v4.10.1 (#35855)Alec Scott1-0/+1
2023-03-07easybuild: add v4.7.0 (#35853)Alec Scott4-7/+11
* easybuild: add v4.7.0 * Add v0.4.7 to all easybuild dependencies * Reorder versions newest to oldest * Fix styling on easybuild dependency loop
2023-03-07dash: add v0.5.12 (#35850)Alec Scott1-0/+1
2023-03-07colordiff: add v1.0.21 (#35847)Alec Scott1-0/+1
2023-03-07aspell: add v0.60.8 (#35834)Alec Scott1-0/+1
2023-03-07Update biopython, gsd, and griddataformats (#35827)Rocco Meli3-8/+44
* update mda dependencies * apply black * Update var/spack/repos/builtin/packages/py-gsd/package.py * Update var/spack/repos/builtin/packages/py-griddataformats/package.py * Update var/spack/repos/builtin/packages/py-griddataformats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove numpy upper bound * Update var/spack/repos/builtin/packages/py-griddataformats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-gsd/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07beforelight: add v1.0.6 (#35843)Alec Scott1-0/+1
2023-03-07busybox: add v1.36.0 (#35840)Alec Scott1-0/+1
2023-03-07bitmap: add v1.1.0 (#35839)Alec Scott1-0/+1
2023-03-07blktrace: add v1.3.0 (#35842)Alec Scott1-0/+1
2023-03-07bmake: add v20230303 (#35841)Alec Scott1-0/+1
2023-03-07atk: add v2.38.0 (#35833)Alec Scott1-0/+1
2023-03-07appres: add v1.0.6 (#35831)Alec Scott1-0/+1
2023-03-07ace: add v7.1.0 (#35829)Alec Scott1-0/+1
2023-03-07alglib: add v3.20.0 (#35830)Alec Scott1-0/+1
2023-03-06py-matplotlib: add v3.7.1 (#35822)Adam J. Stewart1-0/+1
2023-03-06Proj: to CMake (#35108)John W. Parent1-17/+39
* update proj * re-add autotools support * style * Setup env in builders * Drop direct windows conflict for older versions * Default to CMake Add new style class definiton * Proj: setup_run_environment in package not builder * Proj: move run env changes to pkg, rm cmake arg * Set PROJ_LIB during build * Style * Rm redundant configure arg
2023-03-06py-elasticsearch: new versions (#35764)Erik Heeren2-1/+29
* py-elasticsearch: new versions Also add py-elastic-transport as a new dependency * py-elasticsearch: py-urllib3 is no longer a dependency * Update var/spack/repos/builtin/packages/py-elasticsearch/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-05Add Hugo v0.111.1 (#35824)Alec Scott1-0/+1
2023-03-05curl: add v7.88.1 and deprecate previous versions due to CVEs (#35825)Alec Scott1-38/+198
* curl: add v7.88.1 and deprecate previous versions due to CVEs * Add self as a maintainer to curl
2023-03-05libarchive: add v3.6.2 and deprecate previous versions due to CVE-2022-36227 ↵Alec Scott1-8/+45
(#35826)
2023-03-05windows: use `sys.platform == "win32"` instead of `is_windows` (#35640)Todd Gamblin7-49/+39
`mypy` only understands `sys.platform == "win32"`, not indirect assignments of that value to things like `is_windows`. If we don't use the accepted platform checks, `mypy` registers many Windows-only symbols as not present on Linux, when it should skip the checks for platform-specific code.
2023-03-04py-simpervisor: correct pypi (#35785)Erik Heeren1-1/+1
2023-03-03Update python linting packages (#35811)MicK72-2/+8
* add 2.14.2 py-astroid version * add py-pylint 2.26.2 * fix black * fix py-dill depends_on Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fix py-astroid minor versionning Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * modify typing_extensions depends_on --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03Start using paths found in extra_rpaths in compilers.yaml when building (#35376)MatthewLieber1-1/+7
* Start using paths found in extra_rpaths in compilers.yaml when building * running black and changing maintainer list * changing import order to pass isort --------- Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-03-03snakemake: added versions 7.19.0-7.22.0 (#35535)Lucas Frérot1-3/+13
* snakemake: added versions 7.19.0-7.22.0 * snakemake: corrected +reports dependencies
2023-03-03py-ipdb: updating versions (#35654)Loïc Pottier1-16/+12
* py-ipdb: updating versions Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * py-ipdb: fixing versions problem and deleting 10.1 which is too old for Python > 3.6 Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipdb: removed useless dependencies Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipdb: missing @ Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Signed-off-by: Loïc Pottier <pottier1@llnl.gov> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03update github URL (#35789)Jean Luca Bez1-2/+2
2023-03-03Update pyprecice v2.5.0.2 (#35788)Ishaan Desai1-0/+1
* Update versions 2.5.0.0 and 2.5.0.1 * Applying review changes * Updating incorrect checksum for v2.4.0.0 * Add for loop to define depends_on for preCICE versions and bindings versions * Formatting * Missing comma * Add pyprecice v2.5.0.2
2023-03-03py-jupyter-server-proxy: fix dependency condition (#35784)Erik Heeren1-2/+2
Too much copypasta
2023-03-02scons: add a new version (#35652)H. Joe Lee1-6/+2
* scons: add a new version * scons: address @adamjstewart review
2023-03-02Add e3sm scorpio (#35794)downloadico1-0/+54
* e3sm-scorpio: add e3sm-scorpio package This is the Scorpio package from the e3sm.org site. * fixed style errors * removed unneeded dependency on cmake
2023-03-02py-nbstripout: add new package (#35786)Adam J. Stewart1-0/+18
2023-03-02py-rtoml: add new package (#35780)Adam J. Stewart2-0/+40
2023-03-02julia: fix for libuv and Julia (#35776)Robert Underwood2-1/+8
Use correct `shlib_symbol_version` for Julia 1.8, work around issue where libuv-julia's git checkout has arbitrary mtime, causing make to regenerate configure scripts, sometimes.
2023-03-02py-chart-studio: new package (#35759)Erik Heeren1-0/+22
* py-chart-studio: new package * py-chart-studio: add missing six dependency
2023-03-02Add a `py-gmxapi` package. (#35738)M. Eric Irrgang1-0/+48
* Add a `py-gmxapi` package. This package provides the Python package for the GROMACS public API. The Python package is not strongly coupled to a specific GROMACS _version_, but its compiled extension module is strongly coupled to a specific GROMACS _installation_. * Update conflict info. In order to allow `^gromacs@2022.1` while rejecting `^gromacs@2022`, we need to compare to `gromacs@2022.0`. * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Apply suggestions from code review. * Simplify build system structure. * Update dependencies for completeness. * Update var/spack/repos/builtin/packages/py-gmxapi/package.py Per code review, pretend gmxapi <0.4 doesn't exist, for simplicity. * Update var/spack/repos/builtin/packages/py-gmxapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-gmxapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-02WarpX: add v23.03 (#35775)Axel Huebl2-2/+5
Update `warpx` & `py-warpx` to the latest release.
2023-03-02py-kornia: add v0.6.10 (#35554)Adam J. Stewart1-0/+1
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