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2023-08-02bioconductor-dupradar, bioconductor-rsubread: add packages (#39206)pabloaledo2-0/+41
* bioconductor-dupradar, bioconductor-rsubread: add packages * [@spackbot] updating style on behalf of pabloaledo
2023-08-02tximeta: add package (#39207)pabloaledo1-0/+39
* tximeta: add package Signed-off-by: Pablo <pablo.aledo@seqera.io> * [@spackbot] updating style on behalf of pabloaledo --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-02patchelf: 0.18 (#39215)Harmen Stoppels1-0/+1
2023-08-02rust: disable build from downloading a version of LLVM from Rust CI (#39146)Alec Scott1-0/+3
2023-08-02Python: fix library/header error msg format (#39171)Adam J. Stewart1-4/+4
2023-08-01dcmtk: new version and pic configuration (#39161)Martin Aumüller1-8/+15
* dcmtk: checksum 3.6.7 compiles on macos * dcmtk: support pic configuration * [@spackbot] updating style on behalf of aumuell * dcmtk: use define_from_variant for shorter code * dcmtk: refine conflict it appears that dcmtk < 3.6.7 only fails on macos/aarch64: /Library/Developer/CommandLineTools/usr/lib/clang/14.0.3/include/xmmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture" --------- Co-authored-by: aumuell <aumuell@users.noreply.github.com>
2023-08-01py-gevent: add 23.7.0 and py-greenlet: add 3.0.0a1 (#39164)Manuela Kuhn2-9/+18
* py-gevent: add 23.7.0 and py-greenlet: add 3.0.0a1 * Update var/spack/repos/builtin/packages/py-gevent/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove version 1.3.a2 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-01py-openai, py-pandas-stubs (#38912)sid4-9/+109
* simple build of py-openai * added variants to py-openai * py-pandas-stubs is a dependency for py-openai * fixed format and flake8 errors for py-openai * black format error for py-pandas-stubs * [@spackbot] updating style on behalf of sidpbury * made style and format changes to py-openai * made style and format changes to py-pandas-stubs * py-types-pytz is a dependency for py-openai * [@spackbot] updating style on behalf of sidpbury * updated py-openpyxl for ver 3.0.7 and 3.1.2 * Update var/spack/repos/builtin/packages/py-pandas-stubs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * ajs requested changes for py-openai * updated py-openpyxl for supported python * [@spackbot] updating style on behalf of sidpbury * updated py-openpyxl * removed requirement.txt dependencies in py-openpyxl * removed python depends on from openpyxl --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-01Add two latest versions (#39182)mschouler1-0/+2
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-08-01amrex: add 23.08 (#39190)Weiqun Zhang1-0/+1
2023-08-01Mongodb: Add new package (#39085)Dax Lynch2-0/+142
* Added the package * added dependency * Update package.py * Update package.py Added xz as a dependency
2023-08-01Fix source bootstrapping for Debian and derivatives (#39107)vucoda1-1/+15
* Fix Python package.py for Debian and derivatives to find the system Python library location When bootstrapping from source, find_library() does not contain any paths that work for Debian and derivatives. fixes #36666 * Update to pass styling * Update to styling * Update python package.py with fake config value for LIBPL * Update python package.py libpl config_vars entry to follow double quote standard * styling update
2023-07-31petsc, py-petsc4py: add v3.19.4 (#39169)Satish Balay2-0/+2
2023-07-31qt-base: add conflict for 6.5+ with GCC < 9 (#39158)Martin Aumüller1-0/+3
2023-07-31py-numpy: add v1.25.2 (#39172)Adam J. Stewart1-0/+1
2023-07-31update py-cupy to enable ROCm builds and add variant to control optional ↵eugeneswalker3-15/+125
dependencies (#38919) * py-cupy updates: add +rocm and +all * rocm deps are link only * set parallelism for both +rocm and +cuda * add missing deps; remove unnecessary deps; uncomment maintainers; get hipcc properly
2023-07-31py-terminado: add 0.17.1 (#39165)Manuela Kuhn1-8/+13
* py-terminado: add 0.17.1 * Fix style * Update var/spack/repos/builtin/packages/py-terminado/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-31added new packages (#39166)Andrey Perestoronin1-0/+11
2023-07-31libtiff: 4.5.1 (#39159)Martin Aumüller1-0/+1
2023-07-31libgeotiff: new versions (#39160)Martin Aumüller1-0/+2
2023-07-31py-rdflib: add 6.3.2 (#39065)Manuela Kuhn1-3/+10
* py-rdflib: add 6.3.2 * Update var/spack/repos/builtin/packages/py-rdflib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove python dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-31py-python-hostlist: package addition (#39035)mschouler1-0/+20
* Add recipe for py-hostlist * Fix style * Fix style * Add homepage, fix version url and remove unnecessary dependency * Fix version and remove url * Rename package and fix git link --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-07-31fzf: add v0.42.0 (#39150)Alec Scott1-0/+1
2023-07-31py-lightning: add v2.0.6 (#39152)Adam J. Stewart1-1/+3
2023-07-31py-sphinx: add v7.1 (#39151)Adam J. Stewart1-3/+14
2023-07-31libjpeg-turbo: checksum 2.1.5.1 & 3.0.0 (#39157)Martin Aumüller1-0/+2
2023-07-30py-lightly: add v1.4.14 (#39153)Adam J. Stewart1-0/+1
2023-07-30py-chex: add 0.1.5 (#39102)Christopher Christofi1-0/+1
2023-07-30py-csvkit: add 1.1.1 (#39124)Manuela Kuhn1-10/+15
2023-07-30sourmash: new package @4.8.2 (#38571)George Young5-4/+84
* sourmash: new package @4.8.2 * sourmash: new package @4.8.2 * py-bitarray: add 2.7.6, 2.7.4 * Update var/spack/repos/builtin/packages/py-bitstring/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update setuptools dependency * Adding missing deps * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Correcting maturin dep Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/sourmash/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Adding dependency types * Add `@0.14.17` as the last pre-`@1:` release * Switch to use `python_platlib` * Update package.py * Update var/spack/repos/builtin/packages/py-screed/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-30PyPy: add new package (#38999)Adam J. Stewart2-0/+234
* PyPy: add new package * Typo fix Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-30py-pytest-html: Add version 3.2.0 (#38989)Jordan Galby1-2/+20
* py-pytest-html: add 3.2.0 * py-pytest-html: Add py-py version requirement See https://github.com/pytest-dev/pytest-html/blob/v3.2.0/setup.py#L16 * py-pytest-html: Add dependencies from setup.py and pyproject.toml * py-pytest-html: Add git url * py-pytest-html: Add conflict with py-pytest@7.2: pending py-pytest-html@4
2023-07-29Bugfix/ltrace: Add missing elf dependency (#39143)Tamara Dahlgren1-0/+2
2023-07-28Adding NVIDIA HPC SDK 23.7 (#39127)Filippo Spiga1-0/+14
2023-07-28HACCKernels git repository has changed URL. Updating. (#39129)dslarm1-2/+2
2023-07-28Adding optional hip test (#34907)afzpatel2-1/+124
* Adding optional hip test * Modifications to run every samples test * Skipping test directories without a Makefile * fix styling and cleaning code * fix styling and changed method of itterating through sample folders * changed to new syntax for standalone tests * Updates for changes in syntax
2023-07-28libffi: add -Wno-error=implicit-function-declaration for clang >= 16 (#38356)Julien Bigot1-1/+5
2023-07-28MOLGW package: fix dependence to threaded MKL (#39028)Fabien Bruneval1-0/+2
* molgw package.py * molgw package.py almost ready * bug fix in molgw package.py * MOLGW v3.2 * black pass * duplicated line eliminated * remove FIXME in the header * add me as a maintainer * fix previous commit * sort the imports in the order spack wants * chop the too-long lines * many fixes - variants before dependences - eliminate useless build and install stages - no openmp with intel-mkl was broken * after blackization * cleaning * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * Update var/spack/repos/builtin/packages/molgw/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * use threaded mkl when openmp is triggered --------- Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-28py-distributed: add missing tblib dependency. (#39123)Matthias Wolf1-0/+1
I noticed this as we run a `pip check` on all modules we generate. This dependeny seems to have been around for a long time: https://github.com/dask/distributed/blob/2020.12.0/requirements.txt#L8 https://github.com/dask/distributed/blob/2023.4.1/pyproject.toml#L39 While it does not seem essential, it would be nice to have consistent installations by including the missing dependency.
2023-07-28gcc: add 13.2.0 (#39119)Michael Kuhn1-0/+1
2023-07-27Added support for building with Caliper (#39116)Brian Van Essen1-0/+4
2023-07-27Added the import of the regex package (#39117)Brian Van Essen2-0/+3
2023-07-27tecio: adding new package tecio (#39099)snehring1-0/+59
2023-07-27lm-sensors: respect compiler choice (#38890)Aiden Grossman1-0/+8
Currently lm-sensors defaults to the compiler specified in the Makefile (gcc) rather than the one specified in the spec. This patch appends the CC flag to the make invocation with the spec compiler to fix this behavior.
2023-07-27mochi-margo: added version 0.14.1 (#39110)Matthieu Dorier1-0/+1
2023-07-27Updates to rocm recipes for rocm-5.5.0 and rocm-5.5.1 releases (#37910)Sreenivasa Murthy Kolam58-119/+569
* initial commit for rocm-5.5.0 release * fix the hipsparse build error for 5.5.0 * fix build error for amrex .add hiprand as a dependency * modify the patch for rocprofiler-dev * add hiprand for +rocm build * initial commit for rocm-5.5.1 release * bump up the version for rocm-5.5.1 release. * bump up the version for rocmlir.miopen to use this backend only till 5.5 * add new recipe py-barectf and add it as dependency for rocprofiler-dev * revert the changes for rocprofiler-dev for 5.5.0/1 for now as it depends on hsa-amdaqlprofile.so which is a closed source and no spack recipe is available for now. * add rocm-core as dependency for rocm packages from 5.5.0 onwards * avoid download of the gtest for building unit tests
2023-07-27ROCm packages: remove build type variants (#39089)Aiden Grossman41-272/+0
After #36679, the default build type is Release, so there is no need to explicitly set the build type as a custom variant.
2023-07-26Caliper: Add variorum variant (#39104)David Boehme1-0/+5
2023-07-26esmf: add v8.5.0 (#39100)Gerhard Theurich1-0/+1
2023-07-26Add Caliper v2.10.0 (#39103)David Boehme1-1/+2
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