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2016-07-31New package - r-tarifxGlenn Johnson1-0/+44
A collection of various utility and convenience functions.
2016-07-30Merge pull request #1396 from glennpj/r-quantmodTodd Gamblin2-0/+90
New package - r-quantmod
2016-07-30Merge pull request #1395 from glennpj/r-ggmapTodd Gamblin8-0/+375
New package - r-ggmap and dependencies
2016-07-30Merge pull request #1394 from glennpj/r-mapsTodd Gamblin1-0/+42
New package - r-maps
2016-07-30Merge pull request #1393 from glennpj/r-maptoolsTodd Gamblin1-0/+49
New package - r-maptools
2016-07-30Merge pull request #1391 from glennpj/r-caretTodd Gamblin1-0/+50
New package - r-caret
2016-07-30Merge pull request #1390 from glennpj/r-glmnetTodd Gamblin1-0/+49
New package - r-glmnet
2016-07-30Merge pull request #1389 from glennpj/r-vcdTodd Gamblin2-0/+95
New package - r-vcd
2016-07-30Merge pull request #1388 from glennpj/r-multcompTodd Gamblin5-0/+226
New package - r-multcomp
2016-07-30Merge pull request #1387 from glennpj/r-randomforestTodd Gamblin1-0/+42
New package r-randomforest
2016-07-30New package - r-quantmodGlenn Johnson2-0/+90
Qualitative Financial modelling framework.
2016-07-30New package - r-ggmap and dependenciesGlenn Johnson8-0/+375
Spatial visualization with ggplot2
2016-07-30New package - r-mapsGlenn Johnson1-0/+42
Draw geographical maps.
2016-07-30New package - r-maptoolsGlenn Johnson1-0/+49
Tools for reading and handling spatial objects.
2016-07-30New package - r-caretGlenn Johnson1-0/+50
Classification and Regression Training
2016-07-30New package - r-glmnetGlenn Johnson1-0/+49
Lasso and Elastic-Net Regularized Generalized Linear Models
2016-07-30New package - r-vcdGlenn Johnson2-0/+95
Visualizing Categorical Data
2016-07-30New package - r-multcompGlenn Johnson5-0/+226
Simultaneous Inference in General Parametric Models.
2016-07-30New package r-randomforestGlenn Johnson1-0/+42
Breiman and Cutler's Random Forests for Classification and Regression.
2016-07-30New package r-carGlenn Johnson11-0/+510
Companion to Applied Regression.
2016-07-28Merge pull request #1344 from LLNL/bugfix/py-nose-nosetestsTodd Gamblin1-1/+1
do not ignore nosetests script in py-nose
2016-07-28Merge pull request #1331 from adamjstewart/fixes/mvapich2becker331-0/+1
MVAPICH2 depends on libpciaccess
2016-07-27Merge pull request #1235 from davydden/pkg/p4est_run_testsbecker331-22/+18
p4est: use run_tests instead of a variant
2016-07-27Merge pull request #1350 from adamjstewart/fixes/opensslTodd Gamblin1-1/+1
Fix OpenSSL url_for_version
2016-07-25Merge pull request #1352 from glennpj/r_googlevisbecker331-0/+47
New package - r-googlevis
2016-07-25Merge pull request #1351 from glennpj/r_htmlwidgetsbecker3330-0/+1359
New packages - R htmlwidgets
2016-07-24New packages - R htmlwidgetsGlenn Johnson30-0/+1359
2016-07-24New package - r-googlevisGlenn Johnson1-0/+47
2016-07-24Fix OpenSSL url_for_versionAdam J. Stewart1-1/+1
2016-07-23Add dependency type tp r- packagesGlenn Johnson29-93/+95
This PR adds the `nolink` dependency type to r- package dependencies. This is needed due to the new dependency types in Spack. A couple of packages were updated with new versions as well.
2016-07-22do not ignore nosetests script in py-noseGreg Lee1-1/+1
2016-07-22Merge pull request #950 from xjrc/packages/pythonTodd Gamblin2-38/+43
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
2016-07-22Adding temporary script that fixes all Python extensions w/ 'setup_py'.Joseph Ciurej1-2/+5
2016-07-22Improved the build flag construction code in the python install method.Joseph Ciurej1-27/+7
2016-07-22Fixed a bug that was causing Python installs to be affected by user config.Joseph Ciurej1-9/+31
2016-07-22Merge pull request #1336 from glennpj/rcaseTodd Gamblin9-11/+15
Fix alpha case of dependencies for some r-packages
2016-07-21Merge pull request #1230 from hartzell/update-jdkTodd Gamblin1-10/+10
Add URL and md5 for jdk-8u92.
2016-07-21Fix alpha case of dependencies.Glenn Johnson9-11/+15
A while ago I was asked to convert packages to all lowercase. That was done but some dependencies did not get converted in the specification. This commit fixes that as well as a couple of urls that need to be made explicit and a missing dependency on jdk.
2016-07-21Merge pull request #1333 from LLNL/features/no-openssl-pingingTodd Gamblin1-56/+9
Remove remote website pinging from OpenSSL
2016-07-21Merge pull request #1334 from hartzell/add-gcc-5.4.0Todd Gamblin1-0/+1
Update gcc package with info about gcc-5.4.0
2016-07-21Remove remote website pinging from OpenSSLTodd Gamblin1-56/+9
- OpenSSL no longer checks remote versions on the openssl site. - Spack is used on systems that aren't connected to the internet, and this check is probably in the wrong place and affects too many commands. We can work on figuring out a better, more configurable place to put a check like this.
2016-07-21Update with info about gcc-5.4.0George Hartzell1-0/+1
2016-07-21Fix flake8 violationsGeorge Hartzell1-0/+2
2016-07-21Fix shebang line in tcl scriptsGeorge Hartzell2-1/+20
Lmod's configure script goes to the trouble of finding tclsh. This change uses that info to rewrite the #! lines in the tcl scripts so that they call the tclsh that the configure script discovered. It needs to massage the existing shebang lines into something that the sed statement in the makefile can manipulate and it needs to add the path_to_tclsh info into the set of sed statements. Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is incorrect, a fix for another time).
2016-07-21tcl is actually a runtime dependency.George Hartzell1-1/+1
lmod uses tclsh at runtime, so adjust the depends_on accordingly (thanks @davydden!).
2016-07-21The lmod package should depend_on('tcl')George Hartzell2-0/+3
The lmod package needs a tclsh. Up until now it just assumed that one was available on the system. This change adds a depends_on('tcl') to the lmod package. The tcl package installs a tclsh script with an embedded version number (e.g. tclsh8.6) but the lmod configuration looks for tclsh. This change extends the tcl package to symlink tclshX.Y to tclsh in the tcl package bin directory.
2016-07-21MVAPICH2 depends on libpciaccessAdam J. Stewart1-0/+1
2016-07-20MPI related changesGlenn Johnson1-26/+22
- Redid the code for setting the itac symlink for the cluster edition. - Removed the *PATH variables for MPI to avoid a conflict with other MPI environment modules. - Added missing test for `+all` when checking variants.
2016-07-20Changes as discussed in PR reviewGlenn Johnson1-11/+7
- removed unneeded entry for `debugger/gdb/intel64_mic` - set `+mpi` directory name to impi
2016-07-20Fix flake8 errors.Glenn Johnson2-18/+23
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