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2023-04-18New packages: py-ogb, py-outdated, py-littleutils (#36824)Benjamin Meyers3-0/+76
* New packages: py-ogb, py-outdated, py-littleutils * Update var/spack/repos/builtin/packages/py-outdated/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-18py-scipy: link with OpenMP version of armpl-gcc when requested (#37002)Annop Wongwathanarat1-4/+10
2023-04-18fix typo (#36997)Harmen Stoppels1-1/+1
2023-04-17py-html5lib, madgraph5amc: correct hashes of empty files (#36979)Wouter Deconinck2-6/+1
* py-html5lib: correct hashes of empty files Going through and fixing hashes that are due to empty string. ```console $ grep -Ir $(echo -n | sha256sum | awk '{print$1}') $SPACK_ROOT/var/spack/repos/builtin /home/wdconinc/git/spack/var/spack/repos/builtin/packages/madgraph5amc/package.py: sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", /home/wdconinc/git/spack/var/spack/repos/builtin/packages/py-html5lib/package.py: version("0.99", sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855") ``` ```console $ spack checksum py-html5lib 0.99 ==> Found 1 version of py-html5lib: 0.99 https://files.pythonhosted.org/packages/source/h/html5lib/html5lib-0.99.tar.gz ==> Fetching https://files.pythonhosted.org/packages/source/h/html5lib/html5lib-0.99.tar.gz version("0.99", sha256="aff6fd3031c563883197e5a04b7df324086ff5f358278a0386808c463a077e59") ``` * madgraph5: remove incorrectly hashed version
2023-04-17qt: new version 5.15.9 (#36709)Wouter Deconinck1-0/+1
This adds the new LTS version of Qt5. No build system changes needed. The bundled libjpeg and sqlite versions were updated, but it is unclear if these are actual build requirements, and we have not been tracking these specific versions in the version dependencies (likely due to exactly this lack of clarity). Compare: https://github.com/qt/qtbase/compare/v5.15.8-lts-lgpl...v5.15.9-lts-lgpl
2023-04-17xyce: patch issue affecting MPICH (#36826)Paul Kuberry2-0/+41
2023-04-17Add NetCDF95 package. (#36959)Rémi Lacroix1-0/+20
* Add NetCDF95 package. NetCDF95 is an alternative Fortran interface to the NetCDF library which uses Fortran 2003 features. * [@spackbot] updating style on behalf of RemiLacroix-IDRIS --------- Co-authored-by: RemiLacroix-IDRIS <RemiLacroix-IDRIS@users.noreply.github.com>
2023-04-17Boost: add version 1.82.0 (#36924)Tim Haines1-0/+8
2023-04-17netcdf-c: major refactoring, new variants and versions (#36485)Sergey Kosukhin4-232/+310
2023-04-17CI: update Linux images in ML pipelines (#36766)Adam J. Stewart1-0/+5
Add missing openssl/curl/pkgconfig deps to py-tokenizers Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-17r-rstantools: add v2.3.1 (#36890)Alec Scott1-0/+1
2023-04-17r-r-utils: add v2.12.2 (#36884)Alec Scott1-0/+1
2023-04-17cgl: add v0.60.7 (#36940)Alec Scott1-0/+1
2023-04-17masurca: add v4.1.0 (#36942)Alec Scott1-0/+1
2023-04-17spot: add v2.11.4 (#36943)Alec Scott1-0/+1
2023-04-17glab: add v1.28.0 (#36946)Alec Scott1-0/+3
2023-04-17plumed: add 2.8.2, 2.7.6 and their supported gromacs combinations (#36929)Carlos Bederián2-28/+36
* plumed: Add 2.8.2, 2.7.6 * gromacs: add plumed 2.8.2 and 2.7.6 support
2023-04-17slang: add v2.3.3 (#36952)Alec Scott1-0/+1
2023-04-17transdecoder: add v5.7.0 (#36953)Alec Scott1-0/+1
2023-04-17Add "build" stage to many Go packages (#36795)Alec Scott6-6/+45
2023-04-17py-lightly: py-torch+distributed required (#36955)Adam J. Stewart1-1/+9
2023-04-17py-sphinx: add new versions (#36938)Adam J. Stewart1-0/+6
2023-04-17ruby-rake: add v13.0.6 (#36945)Alec Scott1-0/+1
2023-04-17hepmc3: add v3.2.6 (#36941)Alec Scott1-0/+1
2023-04-17Add umpire support to SIRIUS (#36958)Taillefumier Mathieu1-0/+7
2023-04-17Add dependency changes to R packages (#36937)Glenn Johnson9-11/+22
This PR adds dependency changes that were missed with some recent merges of R package updates.
2023-04-16rust: depend on curl+nghttp2 (#36947)Harmen Stoppels1-0/+3
2023-04-16apptainer: new versions 1.1.6, 1.1.7 (#36838)Wouter Deconinck1-2/+3
* apptainer: new versions 1.0.6, 1.0.7 No changes to build system required. https://github.com/apptainer/apptainer/compare/v1.1.5...v1.1.7 * apptainer: rm hanging chad
2023-04-16Change extend to append (#36939)Juan Miguel Carceller1-1/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-04-16libmypaint: change extend to append (#36957)Wouter Deconinck1-1/+2
* libmypaint: change extend to append For same reason as #36939, `extend` takes a list as argument, while `append` takes list entry. Here `append` should be used. * libmypaint: depends_on intltool
2023-04-15r-jsonlite: add v1.8.4 (#36872)Alec Scott1-0/+1
2023-04-15r-progressr: add v0.13.0 (#36881)Alec Scott1-0/+1
2023-04-15r-hoardr: add v0.5.3 (#36869)Alec Scott1-0/+1
2023-04-15r-sn: add v2.1.1 (#36891)Alec Scott1-0/+1
2023-04-15r-rstan: add v2.21.8 (#36889)Alec Scott1-0/+1
2023-04-15r-timedate: add v4022.108 (#36897)Alec Scott1-0/+1
2023-04-15libctl: add v4.5.1 (#36852)Alec Scott1-0/+1
2023-04-15r-yulab-utils: add v0.0.6 (#36900)Alec Scott1-0/+1
2023-04-15r-spades-tools: add v1.0.1 (#36892)Alec Scott1-0/+1
2023-04-15r-svglite: add v2.1.1 (#36893)Alec Scott1-0/+1
2023-04-15r-taxizedb: add v0.3.1 (#36894)Alec Scott1-0/+1
2023-04-15r-tibble: add v3.2.1 (#36895)Alec Scott1-0/+1
2023-04-15r-tidytree: add v0.4.2 (#36896)Alec Scott1-0/+1
2023-04-15sdl2: add v2.26.5 (#36901)Alec Scott1-0/+1
2023-04-15r-utf8: add v1.2.3 (#36898)Alec Scott1-0/+1
2023-04-15r-xts: add v0.13.0 (#36899)Alec Scott1-0/+1
2023-04-15r-dendextend: add v1.17.1 (#36861)Alec Scott1-0/+1
2023-04-15r-curl: add v5.0.0 (#36860)Alec Scott1-0/+1
2023-04-15r-earth: add v5.3.2 (#36863)Alec Scott1-0/+1
2023-04-15OpenMPI: tell it where libcuda.so is (#36784)Howard Pritchard1-0/+5
starting with the 5.0.x release stream the cuda related configury items in Open MPI once again need --with-cuda-libdir so that libcuda.so can be found at configure time, otherwise no cuda support unless someone copies libcuda.so to $CUDA_HOME/lib64 related to #36760 Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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