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2017-07-15Add package for r-ada, update r-rpart version (#4772)George Hartzell2-0/+39
* Add package for r-ada, update r-rpart version Adds a package for r-ada. Update the version for r-rpart because the previous version is no longer at that URL. The previous version *is* in the Archive, but list_url does not seem to be able to find it. * Clean up FIXMEs (blush)
2017-07-15Add package for MuSE (#4779)George Hartzell1-0/+38
2017-07-15Add package for Somatic Sniper (#4778)George Hartzell1-0/+36
Lightly tested on CentOS 7.
2017-07-14New Package: miniFE (#4712)homerdin1-0/+80
* New Package: miniFE * Removed extra property, using variant value directly
2017-07-14Savanna (#4713)Kshitij Mehta1-0/+50
* savanna: Runtime framework for online workflow management from the ECP CODAR project * savanna: added version 0.5 * savanna: Copying the package contents to prefix as part of installation * savanna: Doing submodules=true for git checkout of develop version * savanna: removed dependency on adios@develop. depends on adios * Savanna: Converted package to MakefilePackage
2017-07-14New Package: Pathfinder (#4714)homerdin1-0/+55
* New Package: Pathfinder * Added index for String format * Changed to make Makefile edit more specific * Make Flake8 Happy * Removed unneeded conversion
2017-07-14Add package for freebayes (#4718)George Hartzell1-0/+51
* Add package for freebayes * Don't include url, must use git info. * Fix flake8 complaints
2017-07-14Add package for Sniffles (#4719)George Hartzell1-0/+42
* Add package for Sniffles * Wire up a manual install step The cmake infra doesn't install anything, so do it by hand. The binaries land in a location that embeds the version...
2017-07-14hybpiper: new package (#4720)Audrey Thoma2-0/+104
* hybpiper: new package and spades dependency * hybpiper: making flkae8 happy * hybpiper: fixing dependency errors * fixing python dep type * removing cmake from spade dependencies
2017-07-14Package/cloverleaf (#4759)homerdin1-0/+108
* New Package: CloverLeaf * Removed Tag and Added Documentation * Corrected Dependencies and Variant Values
2017-07-14New Package: Nekbone. (#4748)pkondamudi1-0/+52
2017-07-14New Package: EBMS (#4749)pkondamudi1-0/+46
2017-07-14libwebsockets: new versions (#4764)Axel Huebl2-1/+3
* libwebsockets: new versions both new versions fix a nasty bug leading to a hanging connection on connect. * ISAAC Server: Fix libwebsockets ISAAC server did hang in docker containers due to a bug in libwebsockets.
2017-07-14slepc: fix download url (#4763)Denis Davydov1-1/+1
2017-07-13New Package:XSBench (#4751)pkondamudi1-0/+59
* New Package:XSBench * minor changes * replaced extend() with append() * addressed comment. * removed tags as per PR# 4749
2017-07-13Add two python packages for editing mach-O headers. (#4725)Patrick Gartung2-0/+73
* Add two python packages for editing mach-O headers. Much faster than calling otool and install_name_tool directly * remove non-overriding function * autopep8
2017-07-13py-deeptools: new package and dependencies (#4717)Audrey Thoma5-0/+159
* py-deeptools: new package and dependencies * py-deeptools: fixing python things * missed a fix
2017-07-13New Package: CloverLeaf3D (#4705)homerdin1-0/+93
* New Package: CloverLeaf3D * Fixed Flake8 Mistake * Removed unnecessary check
2017-07-13graphmap: new package (#4707)Audrey Thoma1-0/+43
2017-07-13Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF ↵Jon Rood1-19/+25
directly, for Trilinos. (#4687) * Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary. * Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu. * Changing variant checks to conflicts statements. * Adding comments to Trilinos package.
2017-07-13idba: new package (#4722)Audrey Thoma1-0/+48
2017-07-13infernal: new package (#4724)Audrey Thoma1-0/+49
2017-07-13last: new package (#4729)Audrey Thoma1-0/+39
2017-07-13maverick: new package (#4731)Audrey Thoma1-0/+48
2017-07-13Add package for daligner (#4734)George Hartzell1-0/+51
2017-07-13mcl: new package (#4732)Audrey Thoma1-0/+36
2017-07-13dealii: workaround for concretization bug (#4735)Denis Davydov2-2/+6
* dealii: workaround for concretization bug * trilinos: add Anasazi which got disabled recently
2017-07-13mitofates: new package and dependency libsvm (#4741)Audrey Thoma2-0/+84
2017-07-13 Added ASPA Proxy App (#4743)Akhil Reddy Patlolla1-0/+72
2017-07-12hpx: added new package (#4709)Christoph Junghans1-0/+49
2017-07-11genometools: new package (#4706)Audrey Thoma1-0/+45
* genometools: new package * genometools: fixing perl dependency type
2017-07-10fseq: new package (#4702)Audrey Thoma1-0/+41
* fseq: new package * fseq: fixed dependency type
2017-07-10New Package: MiniAMR (#4701)homerdin1-0/+70
* New Package: MiniAMR * Removed empty braces string formatting
2017-07-10New Package: HPCCG (#4693)homerdin1-0/+77
* New Package: HPCCG * Moved Run Script Install Location
2017-07-10New Package: MiniAero (#4694)homerdin1-0/+62
2017-07-10exabayes: new pacakge (#4695)Audrey Thoma1-0/+57
* exabayes: new pacakge * exabayes: added configure arg * exabayes: adding comments regarding compilers
2017-07-10csdp: new pacakge (#4700)Audrey Thoma1-0/+43
2017-07-10ea-utils: new package (#4690)Audrey Thoma1-0/+51
* ea-utils: new package * ea-utils: simplifying self.spec.prefix * ea-utils: added comment about perl * ea-utils: fixing flake8 error
2017-07-09New package: CoMD (#4697)EmreAtes1-0/+56
* New package: comd * Avoid re-defining build
2017-07-07GCC: Add strip variant to reduce installation size (#4670)Mike DePaulo1-0/+9
* gcc: Add strip variant * gcc: Fix strip variant description being too long
2017-07-07Add a package for tophat (#4698)George Hartzell1-0/+47
Lightly tested on CentOS 7.
2017-07-07fastx-toolkit: solving gcc conflict (#4696)Audrey Thoma1-0/+2
2017-07-07New package: quinoa (#4686)Christoph Junghans1-0/+65
2017-07-07Added TeaLeaf Package (#4683)homerdin1-0/+77
2017-07-07Isaac Server 1.3.1: New version (#4689)Axel Huebl1-0/+1
adds a new release of isaac-server.
2017-07-07emboss: new package (#4691)Audrey Thoma1-0/+40
2017-07-07New Packages: gearshifft, clFFT (#4560)Axel Huebl2-0/+129
Adds the `gearshifft` package, a benchmark suite for heterogeneous implementations of FFTs. Adds clFFT, a software library containing FFT functions written in OpenCL. see: https://github.com/clMathLibraries/clFFT
2017-07-06cap3: new package (#4680)Audrey Thoma1-0/+43
* cap3: new package * cap3: removing boilerplate * cap3: fixed version and added doc
2017-07-06Make vcftools actually install its libraries (#4682)George Hartzell1-2/+2
The vcftools package was installing its Perl libraries into a directory in the staging directory named 'lib', instead of installing them into `prefix.lib` where they should have been because the value passed to the configure script was wrong. The result was that any attempt to run one of the scripts in the package failed with something like: > Can't locate VcfStats.pm in @INC (you may need to install the > VcfStats module) [...] This fix provides the correct information in `configure_args`. Tested lightly on CentOS 7.
2017-07-06Isaac 1.3.1: New version (#4685)Axel Huebl1-0/+1
adds a new release of isaac. (1.3.0 forgot to bump the internal version number in include macros)
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