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gcc-11 does not include the <limits> and <algorithm> as side effect
of including other header, at least not as often as earlier gcc did.
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Problem: Flux expects the `FLUX_PMI_LIBRARY_PATH` to point directly at
the `libpmi.so` installed by Flux. When the env var is unset,
prepending to it results in this behavior. In the rare case that the
env var is already set, then the spack `libpmi.so` gets prepended with a
`:`, which Flux then attempts to interpret as a single path.
Solution: don't prepend to the path, instead set the path to point to
the `libpmi.so` (which will be undone when Flux is unloaded).
* flux-core: remove deprecated environment variables
The earliest checksummed version in this package is 0.15.0. As of
0.12.0, wreck (and its associated paths) no longer exist in Flux. As of
0.13.0, the `FLUX_RCX_PATH` variables are no longer used. So clean up
these env vars from the `setup_run_environment`.
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gromacs@2018:2020.6 is fixed to build with gcc@11.2.0
by adding #include <limits> to a few header files.
Thanks to Maciej Wójcik <w8jcik@gmail.com> for testing versions.
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There was a bug in 2.36.* of missing Makefile dependencies. The
previous workaround was to require 2.36 to be built serially. This is
now fixed upstream in 2.37 and this PR adds the patch to restore
parallel make to 2.36.
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* py-niworkflows: add new package
* Update var/spack/repos/builtin/packages/py-niworkflows/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove unnecessary comment
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-nistats: add new package
* Update var/spack/repos/builtin/packages/py-nistats/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove `conflicts`
* remove test dependencies
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Make python 2 use 'from __future__ import absolute_import' to allow import spack.pkgkit
* Add Spack
* Improve ranges
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* packages/phist, re #26002: force phist to use MPI compiler wrappers (copied from trilinos package)
* packages/phist re #26002, use cmake-provded FindMPI module only
* packages/phist source code formatting
* packages/phist: set MPI_HOME rather than MPI_BASE_DIR, thanks @sethri.
* phist: delete own FindMPI.cmake for older versions (rather than patching it away)
* packages/phist: remove blank line
* phist: adjust sorting of imports
* phist: change order of imports
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1.16 and 1.16.1 are not compatible with LLVM 13
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for root (#26677)
The ASP-based solver maximizes the number of values in multi-valued
variants (if other higher order constraints are met), to avoid cases
where only a subset of the values that have been specified on the
command line or imposed by another constraint are selected.
Here we swap the priority of this optimization target with the
selection of the default providers, to avoid unexpected results
like the one in #26598
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Fix missing declaration of uintptr_t with glibc>=2.17 in 1.53:1.54
See: https://bugs.gentoo.org/482372
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* py-templateflow: add 0.4.2
* py-templateflow: fix python dependency for 0.4.2
* py-templateflow: remove wheel dependency for older versions
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OpenBLAS now has support for the riscv64 architecture. This commit
extends the spack openblas package.py to handle building on riscv64.
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When PR #26659 is merged, boost version boost@1.54.0 will be available for build too.
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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The software rasterizer of Mesa's Gallium3D(even @21.2.3) fails to
build with llvm@13.0.0, use: depends_on('llvm@6:12', when='+llvm')
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versions (#25645)
* kahip: update to cmake for v3.11, retain scons for older versions
* kahip: update build system to cmake for v3.11, retain SCons for older versions
* address PR comments and add maintainer
* address PR comments - correct version to 2.10, add deprecated and url, and remove scons version
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PR #25904 moved the `--with-tcl` option to only older versions. However,
without this option, the build breaks:
```
checking for Tcl configuration... configure: error: Can't find Tcl configuration definitions. Use --with-tcl to specify a directory containing tclConfig.sh
```
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py-sierrapy was merged accidentally and pins its versions to exact
numbers. Add 2.9 as the version for sierrapy and the current 3.2
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librsvg uses pthread_atfork() but does not use -pthread on Ubuntu 18.04 %gcc@8
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* py-twisted,py-storm: dep on zope.interface, bump storm version
py-twisted and py-storm's import tests need zope.interface.
py-storm: Use pypi and add version 0.25. It didn't change reqs.
zope.infterface@4.5.0 imports removed Feature: Use setuptools@:45
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-storm: all deps updated with type=('build', 'run')
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-bcrypt, py-bleach, py-decorator, py-pygdal: fix python dependency
* Update var/spack/repos/builtin/packages/py-bleach/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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