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2020-02-16Remove unneeded dependency on gzip for libmng (#14992)Seth R. Johnson1-1/+0
Libmng only needs gzip to compress man files for distribution, so it builds fine without it. The spack gzip currently fails to compile. ``` config.status: linking /var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/spack-stage/s3j/spack-stage-gzip-1.10-iatwtuk2l5xgwmuh4pwu5bf27yezpydj/spack-src/GNUmakefile to GNUmakefile config.status: executing depfiles commands ==> Executing phase: 'build' ==> [2020-02-14-09:32:45.502913] 'make' '-j12' make: GNUmakefile: Too many levels of symbolic links make: stat: GNUmakefile: Too many levels of symbolic links make: *** No rule to make target `GNUmakefile'. Stop. ```
2020-02-15Add new version of bison (#14940)iarspider1-0/+1
2020-02-15Add new version of clhep (#14943)iarspider1-0/+1
2020-02-15Add new version of elasticsearch (#14945)iarspider1-0/+1
2020-02-15Add new version of expat (#14948)iarspider1-0/+1
2020-02-15Add new version of fontconfig (#14949)iarspider1-0/+2
2020-02-15Add extra version of freetype (#14950)iarspider1-0/+1
2020-02-15Add extra version of gperf (#14951)iarspider1-0/+1
2020-02-15Add extra version of HepMC (#14952)iarspider1-0/+1
2020-02-15Add extra version of highfive (#14953)iarspider1-0/+1
* Add extra version of HepMC * Add extra version of highfive * Undo changes to hepmc
2020-02-15Add extra version of imagemagick (#14954)iarspider1-0/+1
2020-02-15Add extra version of jemalloc (#14955)iarspider1-0/+1
2020-02-15Add extra version of json-c (#14956)iarspider1-1/+2
2020-02-15Add extra version of libgit2 (#14957)iarspider1-0/+1
2020-02-15Add extra version of libsodium (#14958)iarspider1-0/+1
2020-02-15Add extra version of libsvm (#14959)iarspider1-0/+1
2020-02-15Add extra version of libxkbcommon (#14961)iarspider1-0/+1
2020-02-15Add extra version of nlohmann-json (#14962)iarspider1-0/+1
2020-02-15Add extra version of pcre (#14963)iarspider1-0/+1
2020-02-15Add extra version of pixman (#14964)iarspider1-0/+1
2020-02-15Add extra version of py-absl-py (#14965)iarspider1-0/+1
2020-02-15Add extra version of py-asn1crypto (#14967)iarspider1-0/+1
2020-02-15Add extra version of py-arrow (#14966)iarspider1-0/+1
2020-02-15Add extra version of py-astroid (#14968)iarspider1-0/+1
2020-02-15Add extra version of py-attrs (#14969)iarspider1-0/+1
2020-02-15Flang - Support libomptarget offload to NVidia GPU (#15015)Nichols A. Romero2-14/+93
* Modify Flang NVidia GPU variant to make use of built-in CudaPackage * Add OpenMP Offload patch if March 2019 compiler is selected. * Flang parallel build has a race condition. * llvm-flang now uses built-in CudaPackage. * Add variant for different build releases. * Fix OpenMP target offload for NVidia GPUs. * Additional commong flags that are needed with comments. * NVidia BC required for libomp target requires special treatment. Use clang built in previous step to re-compile libomptarget.
2020-02-15Add extra version of py-cython (#14974)iarspider1-0/+1
2020-02-15Add extra version of py-coverage (#14976)iarspider1-0/+1
2020-02-15Add extra version of py-certifi (#14977)iarspider1-0/+1
2020-02-15Add extra version of py-backports-abc (#14978)iarspider1-0/+1
2020-02-15Add extra version of py-decorator (#14980)iarspider1-0/+1
2020-02-15Add extra version of py-importlib-metadata (#14983)iarspider1-0/+1
2020-02-15Add extra version of py-ipaddress (#14984)iarspider1-0/+1
2020-02-15Add extra version of py-ipykernel (#14985)iarspider1-11/+12
2020-02-15Add extra version of py-ipython (#14986)iarspider1-0/+1
2020-02-15Add extra version of py-jinja2 (#14989)iarspider1-0/+1
2020-02-15Add extra version of py-jpype1; add numpy as optional (variant) dependency ↵iarspider1-1/+4
(#14991) * Add extra version of py-jpype1 * Add numpy as optional (variant) dependency
2020-02-15Add extra version of py-jupyter-client (#14996)iarspider1-0/+1
2020-02-15package r-readbitmap Change jpeg dependency (#15004)Glenn Johnson1-1/+1
This PR corrects the jpeg dependency in r-readbitmap to use the jpeg virtual dependency.
2020-02-15mafft: add 7.453 (#15006)Justin S1-0/+1
2020-02-15cloc: add version 1.84 (#15012)Matthias Diener1-0/+1
2020-02-15Add a new package: Metall (#14903)Keita Iwabuchi1-0/+22
* Add a new package: Metall * Fix errors in metall/package.py * Update var/spack/repos/builtin/packages/metall/package.py Change to https style URL Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update in metall/package.py. Change Metall to depend on Boost always * Update in metall/package.py. Change to install Boost with the default variants * Update metall/package.py. Removed a comment Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-14cuda: add libxml2 as a dependency for newer versions (#14758)Scott Wittenburg1-0/+8
2020-02-14py-whichcraft: new package (#14907)Matthias Wolf1-0/+17
* py-whichcraft: new package * address comment
2020-02-13fix env vars before install (#14575)Sajid Ali1-0/+3
2020-02-13Updated both cub and nccl versions. Fixed a bug in the cub download (#14852)Brian Van Essen2-1/+10
url.
2020-02-13New package: r-codex (#14869)Glenn Johnson2-0/+50
This PR adds the r-codex package. - new package: r-bsgenome-hsapiens-ucsc-hg19
2020-02-13openblas: add variant +consistentFPCSR (#14876)Kai Torben Ohlhus1-0/+6
Add the OpenBLAS variant `+consistentFPCSR`, by default `False`, which adds the compile definition `CONSISTENT_FPCSR=1` as documented in OpenBLAS `Makefile.rule`.
2020-02-13[rsync] Use popt and zlib (#14755)Dr. Christian Tacke1-0/+6
popt and zlib are available as spack packages. So use them instead of building internal ones.
2020-02-13New package: r-exomedepth (#14884)Glenn Johnson2-0/+52
This PR adds the r-exomedepth package and r-aod as a dependency.
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