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2024-05-12octave: use pcre2 for @8: (#42636)Alex Richert1-1/+6
* octave: use pcre2 for @8: * Add 'pcre2' variant to octave to control pcre vs. pcre2 * Update var/spack/repos/builtin/packages/octave/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> --------- Co-authored-by: Alex Richert <alexander.richert@noaa.gov> Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-12fastjet: Add a cxxstd variant (#44072)Juan Miguel Carceller1-0/+13
* fastjet: Add a cxxstd variant * Use f-strings * Add multi=False --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10qpdf: new package (#44066)James Taliaferro1-0/+45
* New package: qpdf * Update var/spack/repos/builtin/packages/qpdf/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> * Fix format of cmake_args --------- Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-10New package: py-nuitka (#44079)James Smillie1-0/+24
2024-05-10Windows: Non config changes to support Gitlab CI (#43965)John W. Parent1-4/+17
* Quote python for shlex * Remove python path quoting patch * spack env: Allow `C` "protocol" for config_path When running spack on windows, a path beginning with `C://...` is a valid path. * Remove makefile from ci rebuild * GPG use llnl.util.filesystem.getuid * Cleanup process_command * Remove unused lines * Fix tyop in encode_path * Double quote arguments * Cleanup process_command * Pass cdash args with = * Escape parens in CMD script * escape parens doesn't only apply to paths * Install deps * sfn prefix * use sfn with libxml2 * Add hash to dep install * WIP * REview * Changes missed in prior review commit * Style * Ensure we handle Windows paths with config scopes * clarify docstring * No more MAKE_COMMAND * syntax cleanup * Actually correct is_path_url * Correct call * raise on other errors * url2path behaves differently on unix * Ensure proper quoting * actually prepend slash in slash_hash --------- Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com> Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
2024-05-10dd4hep: cleanup recipe, remove deprecated versions and patches (#44110)Juan Miguel Carceller3-123/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10edm4hep: cleanup recipe, remove deprecated versions and patches (#44113)Juan Miguel Carceller2-86/+3
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10libtheora: Remove unneeded autoreconf section (#44063)Chris Marsh1-6/+0
* Remove autoreconf section that was causing issues with libtool mismatch. Fixes issue #43498
2024-05-10dla-future: Add 0.4.1 (#44115)Mikael Simberg1-0/+3
* dla-future: Add 0.4.1 * Use ninja as generator in dla-future
2024-05-10pika: Add 0.25.0 (#44114)Mikael Simberg1-0/+2
2024-05-10libhugetlbfs: Fix the build with an update to 2.24 (#44059)Stephen Sachs1-5/+15
Co-authored-by: Stephen Sachs <stesachs@amazon.com> Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-05-09flux-sched: set the version if the ver file is missing (#44068)Tom Scogland1-0/+4
* flux-sched: set the version if the ver file is missing problem: flux-sched needs a version, it normally gets this from a release tarball or from git tags, but if using a source archive or a git clone without tags the version is missing solution: set the version through cmake based on the version spack sees when the version file is missing * Update var/spack/repos/builtin/packages/flux-sched/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> --------- Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-09miniforge3: add new versions with mamba installation (#43995)Christopher Christofi1-39/+52
* miniforge3: add new version with mamba installation * fix styling * update maintainers * Fix variant directive ordering
2024-05-09Fix filtering external specs (#44093)Massimiliano Culpo1-0/+16
When an include filter on externals is present, implicitly include libcs. Also, do not penalize deprecated versions if they come from externals.
2024-05-09pythia8: add a cxxstd variant (#44077)Juan Miguel Carceller1-0/+14
* pythia8: add a cxxstd variant * Add multi=False, fix regexp --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-09kokkos-nvcc-wrapper: add missing versions (#44089)Richard Berger1-0/+4
2024-05-09mmg: Build & install shared libraries, add 5.7.2 & 5.7.3(#43749)Julien Cortial1-0/+3
2024-05-09Universal Ctags: Add version 6.1.20240505.0 (#44058)Rémi Lacroix1-0/+3
2024-05-09package: libsodium update URL to GitHub (#44090)Vanessasaurus1-10/+6
Problem: the libsodium download endpoints are not reliable, they fail multiple times a day for several of our automated pipelines. Solution: use the GitHub releases and branches. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2024-05-09Kokkos: adding new release 4.3.01 (#44086)Luc Berger2-0/+3
2024-05-09Octopus 14.1 : Add new version hash (#44083)Ashwin Kumar Karnad1-0/+6
* octopus: add hash for new version * octopus: add --enable-silent-deprecation flag when @14.1:
2024-05-09amr-wind: add missing variants (#44078)Jon Rood1-16/+33
* amr-wind: add missing variants * Fix copy and paste. * waves2amr is only available on amr-wind@2.0 * Style. * Use satisfies.
2024-05-08Orca (standalone) 5.0.4 (#44011)alvaro-sch1-1/+2
* orca: added latest version 5.0.4 * Fixed openmpi versions
2024-05-08mpich: Add license (#43821)Ken Raffenetti1-1/+1
2024-05-08hipsparselt: new package (#44080)Sreenivasa Murthy Kolam2-0/+169
* Initial commit for adding hipsparselt recipe * correct the style errors * remove master version
2024-05-08gcc: use -idirafter for libc headers (#44081)Harmen Stoppels1-1/+1
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc headers. We're using `-isystem` for libc, which puts those headers too early in the search path. `-idirafter` fixes this so `include_next` works.
2024-05-08JAX: add v0.4.27, NCCL variant (#44071)Adam J. Stewart2-113/+131
2024-05-08add flag to turn off building tests and examples (#44075)Jake Koester1-0/+6
2024-05-08py-jsonargparse: add v4.28.0 (#44074)Adam J. Stewart1-0/+1
2024-05-08hypre: add cublas and rocblas variants (#44038)Jon Rood1-1/+12
* Add cublas and roblas variants to hypre. * Fix mistakes. * Remove newline. * Address suggestions.
2024-05-08Bump up the version for ROCm-6.1.0 (#43843)renjithravindrankannath58-66/+1054
* Bump up the version for ROCm-6.1.0 * Style check error correction and patch files * Update for rocm-openmp-extras 6.1 * updating rocm-openmp-extras and math libraries with 6.1 * Style check error correcion * updating hipcub, hipfort & miopen-hip for 6.1 * Rocm-openmp-extras and some mathlib updates * iAudit error correction and rocmlir update * Updating dependency on suite-sparse and adding path * Style check error corection * hip-tensor 6.1.0 update * rdc 6.1 needs grpc 1.59.1 * rvs 6.1 updates and patch
2024-05-08darshan-runtime,darshan-util,py-darshan: add darshan-3.4.5 packages (#43989)shanedsnyder3-3/+10
* add darshan-3.4.5 packages, update URLs * py-setuptools version switches for py-darshan * more py-darshan test dependencies * try a conditional importlib_resources dependency
2024-05-08iq-tree: add new version delete duplicate package (#44043)snehring4-45/+5
* iq-tree: add new version delete duplicate package * Replace iqtree2 dependency orthofinder: replace iqtree2 with iq-tree@2 py-phylophlan: replace iqtree2 with iq-tree@2
2024-05-08cernlib: add 2023.08.14.0-free (#40211)andriish1-4/+13
* Update CERNLIB Update CERNLIB * Update package.py * Update package.py * [@spackbot] updating style on behalf of andriish * cernlib: merge crypto->crypt patches * cernlib: depends_on xbae when `@2023:` * cernlib: patch for Xbae and Xm link order (DSO) * [@spackbot] updating style on behalf of andriish --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08unmaintained pkg bump: 2024-05-05 (#44021)Alec Scott92-73/+166
* unmaintained pkgs: bump versions * Changes following review feedback * glm: update cmake dependency --------- Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-08gcc: add v14.1.0 (#44053)Massimiliano Culpo1-0/+2
2024-05-08mold: Replace maintainer (#44047)Tamara Dahlgren1-1/+1
* Remove maintainer at his request * Add msimberg as the maintainer
2024-05-08r: patch R-CVE-2024-27322 for `r@3.5:4.3.3` (#44050)Todd Gamblin1-0/+8
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07orca: switching to xz archives, removing old version (#44035)snehring1-38/+10
2024-05-07Add transformer engine package (#43982)Auriane R1-0/+48
* Add py-flash-attn@2.4.2 * Add py-transfomer-engine package --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-05-07gaudi: Add version 38.1 (#44055)Juan Miguel Carceller1-0/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-07Dyninst: update compiler requirements (#44033)Tim Haines1-1/+1
As of 13.0.0, Dyninst can now build with any Linux compiler.
2024-05-07fix(adios2): fix missing stdind include in 2.7 (#43786)Vicente Bolea2-0/+27
2024-05-07mold: Add 2.30.0 and 2.31.0 (#44034)Mikael Simberg1-0/+2
2024-05-07python-venv: use correct python name for which call (#44048)John W. Parent1-1/+2
2024-05-07Fix issues in packages with the new release of archspec (#44037)Massimiliano Culpo6-17/+8
2024-05-06neic-finitefault: adding new package and dependencies (#44032)snehring6-0/+638
* neic-finitefault: adding new package * py-obspy: adding new package * py-okada-wrapper: adding new package * py-pygmt: adding new package * py-pyrocko: adding new package --------- Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-06amr-wind: updates and fixes (#43993)Jon Rood1-24/+34
* Updates and fixes for AMR-Wind. * Add versions and update openfast constraints. * Style. * Fix version.
2024-05-06(py)-fenics-dolfinx: version update (#44002)Garth N. Wells2-1/+12
* Update DOLFINx to v0.8 * Fix typo
2024-05-06Add LSP client extension for Kakoune (#44000)James Taliaferro1-0/+19
* new package: kakoune-lsp * blacken * add myself as a maintainer
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