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2018-05-17init: factor paths out of spack/__init__.py and into spack.paths moduleTodd Gamblin6-10/+10
2018-05-17flex: use 2.6.3. by default (#8154)Denis Davydov1-3/+6
Fixes #8152 Flex 2.6.4 doesn't build with gcc@7:. This sets Flex 2.6.3 as the preferred version. The flex package had a conflict directive for this but originally the recorded conflict was specific to ubuntu; this appears to be an issue on multiple operating systems so this also updates the conflict to be more general and adds a comment which links to the relevant issues.
2018-05-17swap-assembler: Create new package. (#8144)lingnanyuan1-0/+43
* swap-assembler: Create new package. * swap-assembler: fix flake8 error.
2018-05-17pv: initial commit (#8147)Christoph Junghans1-0/+36
2018-05-17r-rstan: new version and dependents (#8158)Levi Baber3-0/+4
* r-stanheaders: new version * r-rstan: new version * r-rcppeigen: new version * r-rstan: requires newer version of r-rcppeigen
2018-05-17Add version 6.1. to ESSL spackage file. (#8170)Serban Maerean1-0/+1
2018-05-17cbtf-argonavis-gui: add openspeedshop-utils package to address qt conflicts ↵Jim Galarowicz8-211/+689
(#8066) Fixes #7946 Creates an openspeedshop-utils package that does not depend on qt3 and can be used to resolve the needs of cbtf-argonavis-gui. Changes for creating a release versus develop build are also included. There are package versions which are no longer relevant (e.g. 1.3.0 for cbtf-argonavis-gui has been replaced with 1.3.0.0) but these versions need to be kept to allow uninstalling them; issue #8173 has been created to investigate this.
2018-05-16Add dependencies for py-dask (#8120)Adam J. Stewart11-17/+367
2018-05-16r-rcppcnpy: a new package. (#8139)健美猞猁1-0/+39
* r-rcppcnpy: a new package. * Specify dependency versions. * Update dependency.
2018-05-15Add list_url to allow download of prior versions from cran archive (#8141)Eric2-0/+2
2018-05-15Add libunwind-1.2.1 (#8145)David Böhme1-0/+1
2018-05-15astyle: add 3.1 (#8137)Denis Davydov1-0/+1
2018-05-14patch petsc test cases for XL compiler (#8091)Serban Maerean2-0/+62
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step. - The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
2018-05-14Added Shim to Support hdf5+mpi in Spack Silo (#8130)Robert Pavel1-1/+9
* Added Shim to Support hdf5+mpi in Spack Silo Added compatibility for hdf5+mpi to silo spackage to support spackages with dependency chains that include silo and hf5+mpi * Fixed fixable flake8 issue with silo spackage Fixed missing whitespace around operator * Setting MPI Variant to Default to True As per guidance changing variant to default to MPI builds
2018-05-14salmon: adding in version restriction for boost (#8129)snehring1-1/+1
1.67 does not work with this
2018-05-14prenek missing X.h (#8121)Cameron Smith1-0/+9
2018-05-14lordec: Create new package. (#8095)lingnanyuan1-0/+44
* lordec: Create new package. * lordec: Add homepage, change to MakefilePackage. * Modify dependency type.
2018-05-14r-fit-models: Create new package (#8122)Eric1-0/+38
2018-05-14r-vipor: Create new package (#8128)Eric1-0/+38
2018-05-14LBANN: add hydrogen as optional dependency (#8085)Brian Van Essen2-6/+188
Add Hydrogen package for fork of Elemental library. Update LBANN to use either Hydrogen or Elemental.
2018-05-14r-shinydashboard: Create new package (#8116)Eric1-0/+40
2018-05-14r-picante: Create new package (#8117)Eric1-0/+40
* r-picante: Create new package * Remove dependency already included in RPackage base class
2018-05-14r-squash: Create new package (#8118)Eric1-0/+36
* r-squash: Create new package * Remove dependency already included in RPackage base class * remove extra file
2018-05-14Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109)Sajid Ali1-2/+5
* new file: package.py * corrected using pep8online.com * Update package.py * correct typo * as requested * modified: package.py * Update package.py
2018-05-14Aegean: new package (#8113)Levi Baber2-0/+46
* aegean: new package * genometools: set dependent env for aegean
2018-05-14charliecloud: fix copyright (#8115)Christoph Junghans1-1/+1
2018-05-14dealii: another fix for quick tests only in 9.0 and thus hash (#8114)Denis Davydov1-1/+1
2018-05-14A new pacakge: Kaiju. (#8111)健美猞猁1-0/+48
* A new package: kaiju. * Replace ftp:// with https://.
2018-05-14hisea: new package (#8112)Levi Baber1-0/+43
2018-05-14Add numexpr 3 (#8107)Sajid Ali1-0/+48
* new file: package.py * corrected using pep8online.com * Update package.py * correct typo * as requested
2018-05-14dealii: update hash due to upstream changes (#8105)Denis Davydov1-1/+1
2018-05-14add version 0.6.2 to yaml-cpp (#7931)healther1-1/+11
2018-05-13Add cmake for newer version of libjpeg-turbo (#8102)Sajid Ali1-4/+21
* modified: package.py * add official build reference. * Update package.py * Update package.py * Update package.py * fixed with pep8online.com * update make to make() * change homepage
2018-05-13charliecloud: initial commit (#8106)Christoph Junghans1-0/+38
2018-05-13boost: added the +numpy variant which enables building libboost_numpy (#8104)dorier1-0/+4
* added the +numpy variant which enables building the libboost_numpy libraries * Update package.py Added `type=('build', 'run')`
2018-05-12Create custom PATH that texlive requires in its module. (#8064)Jon Rood1-2/+7
* Create custom PATH that texlive requires in its module. * Updating texlive to 2018 distribution. * Using platform instead of sys for easier portability across linux and osx.
2018-05-12plink: new source version 1.9-beta5 (#8076)Yifan Zhu1-4/+16
* plink: new source version 1.9-beta5 * plink: replace version 1.9 with 1.07
2018-05-12Add package for "bumpversion" (#8078)George Hartzell1-0/+37
* Add package for "bumpversion" bumpversion is a tool that automagically increments version numbers for projects. It can update files and do other magic along the way. * Remove py- package prefix and use pypi.io URL Renamed the package 'bumpversion'. Fetch the package from pypi.io. * Add version info for bumpverion@0.5.3
2018-05-12r-cdcfluview: new package (#8089)Yifan Zhu1-0/+51
* r-cdcfluview: new package * updated package.py
2018-05-12nfft: added version 3.4.1 Moved package to github (#8099)Massimiliano Culpo1-2/+3
2018-05-12netcdf: added version 4.6.1 (#8098)Massimiliano Culpo1-0/+1
2018-05-12shoremap: new package (#7343)Yifan Zhu3-0/+83
2018-05-11dealii: add 9.0.0 (#8096)Denis Davydov1-6/+7
2018-05-11pmix: add 1.2.5 and 2.0.3 bug fix releases (#8097)Howard Pritchard1-0/+2
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-05-11masurca: new version (#8094)Levi Baber1-0/+1
* masurca: new version * masurca: reorder versions
2018-05-11llvm: replace @when with internal check in @run_before (#8092)scheibelp1-1/+2
Fixes #8088 #7012 added a @when condition for a @run_before check to constrain that check to only run on Darwin. @when is intended to be used to choose one of several different implementations of a given function and cannot be used to conditionally deactivate a check altogether. This replaces the external decorator with a check that executes at the beginning of the function.
2018-05-11adds new version to swiftsim (#8093)Mayeul d'Avezac1-0/+1
2018-05-11dealii: disable tpetra when +cuda; check for '' in cuda_arch (#7958)Denis Davydov1-5/+9
* dealii: disable tpetra when +cuda; check for '' in cuda_arch * trilinos: fix Kokkos CUDA * Revert "trilinos: fix Kokkos CUDA" This reverts commit 6aae894bc7d49c9e736c06f65b81b8c219443920. * update according to @aprokop comments * minor * fix flake8
2018-05-11gmsh: add netgen and tetgen (#8060)Denis Davydov3-18/+31
* gmsh: add netgen and tetgen dealii: require gmsh+netgen+tetgen netgen: use http instead of https * dealii: add oce requirement to gmsh
2018-05-10r-mmwrweek: new pacakge (#8086)Yifan Zhu1-0/+40
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