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2021-02-19ruby: remove unwanted dependencies (#21797)holrock1-4/+5
ruby/tk is removed from stdlib at ruby2.4.0
2021-02-19gperftools: add v2.8.1 (#21794)iarspider1-0/+1
2021-02-19davix: add v0.7.6 (#21773)iarspider1-4/+3
2021-02-19Updates to the LBANN software stack (#21733)Brian Van Essen4-5/+41
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to C++17. The minumim C++ standard for Aluminum is C++14. Add new versions for Aluminum, Hydrogen, and DiHydrogen. Added support for high performance linkers in LBANN recipe (gold and lld). Added variants to LBANN for enabling embedded Python support independently from the Python front end.
2021-02-19blast2go: conflicts for platforms other than x86_64 (#21693)h-denpo1-0/+5
2021-02-19hdf-eos5: fix hdf5 dependency (#21789)Tomoyasu Nojiri1-4/+1
2021-02-19librelp: add test dependency on valgrind (#21752)darmac1-0/+1
2021-02-18py-sip: change url because some old package is missing (#21402)darmac1-9/+9
2021-02-18py-fenics-instant: new package for legacy fenics 2016 and 2017 versions (#21775)emai-imcs1-0/+28
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions * Update var/spack/repos/builtin/packages/py-fenics-instant/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-18Testing: use spack.store.use_store everywhere (#21656)Massimiliano Culpo1-4/+5
Keep spack.store.store and spack.store.db consistent in unit tests * Remove calls to monkeypatch for spack.store.store and spack.store.db: tests that used these called one or the other, which lead to inconsistencies (the tests passed regardless but were fragile as a result) * Fixtures making use of monkeypatch with mock_store now use the updated use_store function, which sets store.store and store.db consistently * subprocess_context.TestState now transfers the serializes and restores spack.store.store (without the monkeypatch changes this would have created inconsistencies)
2021-02-18xsdk: fix @develop build (#21749)Satish Balay5-20/+47
- petsc4py: update @develop build from petsc repo - omega-h: develop branch is now main branch
2021-02-18flibcpp: Activate SWIG rebuild when +swig (#21767)Seth R. Johnson1-0/+1
This option allows downstream packages to build with SWIG and the flibcpp-exported SWIG interfaces.
2021-02-18patches to apply to gdbm and m4 when using oneapi compiler (#21740)Gregory Lee3-0/+20
2021-02-18Arbor: rely on spack's compiler wrapper to set architecture (#21758)Sebastian Schmitt1-0/+3
2021-02-18openrasmol: new package (#21530)ketsubouchi4-0/+119
2021-02-18sgpp: use spack compiler instead of default gcc (#21756)Freifrau von Bleifrei1-13/+19
Co-authored-by: Theresa Pollinger <pollinta@ipvs.uni-stuttgart.de>
2021-02-18hpx: add v1.6.0 (#21757)Mikael Simberg1-0/+1
2021-02-18eccodes: add v2.20.0 (#21703)Sergey Kosukhin1-0/+1
2021-02-18enzo: fix for aarch64 (#21715)Tomoyasu Nojiri2-0/+14
2021-02-18tcl: add v8.6.11 (#21678)Xavier Delaruelle1-1/+2
2021-02-18dlib: fix dependency on opencv (#21718)h-denpo1-1/+1
Since a variant (imgcodecs,default=False) has been added to opencv, +imgcodecs is now required in dlib's opencv dependency.
2021-02-18quantum-espresso: fix ldflags for scalapack (#21719)m-shunji1-1/+1
2021-02-18cmake: add v3.18.6, v3.19.5 (#21725)Harmen Stoppels1-0/+2
2021-02-18osu-micro-benchmarks: add v5.7 (#21729)Michael Kuhn1-0/+1
2021-02-18nsimd: add v2.2 (#21743)Erik Schnetter1-0/+1
2021-02-18ruby: add v2.7.2, v3.0.0 (#21745)holrock1-0/+2
2021-02-18sratoolkit: add v2.10.9 (#21746)Desmond Orton1-1/+2
2021-02-18ctpl: add dependency on gettext (#21747)darmac1-0/+1
2021-02-18py-scipy: add v1.6.1 (#21748)Adam J. Stewart1-0/+1
2021-02-18vcsh: add bin as a directory (#21750)darmac1-0/+1
2021-02-18cbflib: new package (#21531)ketsubouchi4-0/+75
2021-02-18openfst: fix conflicts version for gcc (#21753)darmac1-1/+1
2021-02-17py-fenics-ufl: inclusion of version 2016.2.0 (#21738)emai-imcs1-0/+1
* fix to pre 2019.1.0 version and support for 2016.1.0 added * added 2016.2.0 version for retro dolfin support
2021-02-17fix to compiliation error with fenics in pre 2019 versions and support for ↵emai-imcs1-1/+4
2016.2.0 version of fiat added (#21708)
2021-02-17update to dijisto to support 2019.1.0 version (#21707)emai-imcs1-5/+6
2021-02-17openblas@0.13.3 cannot be built with gcc<10.2 on power (#21711)eugeneswalker1-0/+3
2021-02-18py-numpydoc: Add new version, and care for old version. (#21713)Tomoki, Karatsu1-2/+6
2021-02-17Update the deps for the r package (#21654)Glenn Johnson1-31/+33
The dependencies needed a little clean up as several dependencies are only needed for the +X variant. This PR consolidates all of the dependencies that actually require +X and explicitly disables them when ~X to prevent accidentally picking up system libraries. - modified the description of the +X variant - arranges dependencies to group them - added missing dependency on xz - removed unneeded dependencies - freetype - glib - set dependencies when +X - cairo - jpeg - libpng - libtiff - tcl/tk - R uses tcl/tk together, so only tk needs to be depended on, and only when +X - moved tcl/tk resources to with/without-x test - added explicit with/without settings for - cairo - jpeglib - libpng - libtiff - tcltk
2021-02-17openssl: 1.1.1j (#21726)Andrew W Elble1-0/+1
2021-02-17Bugfix for x86_64 skylake and other archs where SIMD features are disabled ↵Evan Bollig1-1/+4
by Fall back option. (#21727)
2021-02-17py-llvmlite: Specified llvm version for aarch64. (#21695)Tomoki, Karatsu1-6/+9
* py-llvmlite: Specified llvm version for aarch64. * Add ~flang variant to llvm dependencies.
2021-02-16povray: add smoke test (#21667)ketsubouchi1-0/+8
2021-02-16py-typing: new version, avoid issues with newer versions of python (#21684)Andrew W Elble1-1/+6
* py-typing: new version, avoid issues with newer versions of python https://pypi.org/project/typing/ "For package maintainers, it is preferred to use typing;python_version<"3.5" if your package requires it to support earlier Python versions." * update conflict version / more message detail * change the depends_on, leave a comment suggesting correct usage
2021-02-16bump openkim-models to 2021.01.28 (#21637)Ryan S. Elliott1-1/+5
2021-02-16enzo: new package (#21634)Michael Kuhn1-0/+64
2021-02-16py-horovod: new versions (#21681)Andrew W Elble2-5/+13
* py-horovod: new versions * 0.21.3 * dep changes * fixes
2021-02-16Remove minimum version for cfitsio dependency (#21630)Martin Pokorny1-1/+1
The actual, documented minimum version of the cfitsio dependency, v3.181, is now neither available for (easy) download from NASA, nor as a Spack package. No upper bound on version number exists (at this time).
2021-02-16Add hfp as a maintainer (#21671)Harmen Stoppels1-0/+2
2021-02-16Add manual_download attribute to packages (#21687)Glenn Johnson24-0/+29
Add `manual_download = True` to packages that need to do manual downloads but do not have the `manual_download attribute set. This provides a message when installing these packages rather than a generic fetch error.
2021-02-16Add manual_download = True to genemark-et package (#21686)Glenn Johnson1-0/+1