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2021-01-20util-linux: Add ncurses depend (#21165)Tomoyasu Nojiri1-0/+1
2021-01-20systemtap: Add depend (#21163)Tomoyasu Nojiri1-1/+4
* systemtap: Add depend * systemtap: Fix depend
2021-01-20libevent: Remove compiler flags incompatible with NVIDIA HPC SDK (#21181)Scott McMillan1-0/+12
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20SEACAS: New version v2021-01-20 (#21178)Greg Sjaardema1-0/+3
Added a new version due to new application `nas2exo` and also adding the build of `slice` if `+applications` is specified.
2021-01-20[py-statsmodels] added version 0.12.1 and updated dependencies accord… ↵Jen Herting1-1/+7
(#21175) * [py-statsmodels] added version 0.12.1 and updated dependencies accordingly * [py-statsmodels] added python requirements for new version and fixed formatting for readability
2021-01-20Mirror current E4S hypre test suite test as a smoke test (#20484)Sergei Shudler1-0/+23
2021-01-20Fix PVM dependencies (#20951)bryanherman1-1/+12
* added m4 dep to PVM recipe * added libtirpc dep to PVM recipe * decode str or bytestr string to unicode * Resolved comments from @adamjstewart on setup_build_environment
2021-01-20Propagate SCR resource_manager flag to libyogrt dependency (#21168)Robert Brunner1-0/+2
* When the SCR spec specifies a resource_manager=SLURM or LSF flag, propagate the spec through to the libyogrt scheduler=slurm or lsf * Use libyogrt default scheduler option when the SCR spec does not specify LSF or SLURM
2021-01-20Perl: NVIDIA HPC SDK updates (#21177)Scott McMillan2-1/+3
* Perl: NVIDIA HPC SDK updates * fix indentation Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20Plumed: Ensure the Python interfaces are also built with Spack's wrappers. ↵Rémi Lacroix1-0/+8
(#20625)
2021-01-20PETSc: Add a new ptscotch variant. (#20699)Rémi Lacroix1-0/+19
Currently the Parmetis wrapper is disabled which means nested dissection cannot be used with PTScotch.
2021-01-20updated relion package for new versions (#21155)Evan Bollig1-8/+12
* updated relion for new versions * Switched to checksum versions * Enabled spack tracking for MKL and TBB when CPU optimizations are enabled * Added variants to control MKL FFT and Ppatent feature * Replaced tags with sha256 for older versions an and switched to virtual packages
2021-01-20py-funcy: new recipe (#21136)Andrew-Dunning-NNL1-0/+19
* py-funcy: new recipe * Update var/spack/repos/builtin/packages/py-funcy/package.py add build and run python dependencies Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20qwt: Fix qt depend (#21161)Tomoyasu Nojiri1-1/+1
2021-01-20z3: New version 4.8.9 (#21167)Erik Schnetter1-0/+2
2021-01-20openjdk: Add ppc64le package (#21173)Baptiste Jonglez1-2/+3
2021-01-20fix an issue where some variants were not being concatenated correctly (#21174)Omar Padron1-1/+3
2021-01-20py-iminuit: update version to fix test error (#21143)darmac1-1/+3
* py-iminuit: update version to fix test error * py-iminuit: update py-numpy limitation * py-iminuit: fix dependency mistake
2021-01-20py-mikado: Add version 1.2.4 (#20678)Tomoyasu Nojiri3-21/+20
* py-pysam: Add version 0.15.3 * py-biopython: Add version 1.78 * py-mikado: Add version 1.2.4 * py-mikado: Reflection of review points. * py-biopython: Add python depend * py-mikado: Fix depend * py-mikado: Add py-tabulate depend
2021-01-20[WIP] relocate.py: parallelize test replacement logic (#19690)Nathan Hanford1-0/+35
* sbang pushed back to callers; star moved to util.lang * updated unit test * sbang test moved; local tests pass Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-01-19r-farver: Fix checksum for 2.0.1 (#20897)Tomoyasu Nojiri1-1/+1
2021-01-19fix typo in ec-data-vis-sdk package (#21156)Omar Padron1-2/+2
2021-01-19fixing outdated metis link (#21003)mlawsonca1-11/+4
* fixing outdated metis link * updated url to the official website since the previous url was a GitHub repo that is an unofficial mirror that only contains the latest version
2021-01-19py-pyjnius: new recipie (#21150)Andrew-Dunning-NNL1-0/+20
2021-01-19py-dictdiffer: new recipe (#21151)Andrew-Dunning-NNL1-0/+19
* py-dictdiffer: new recipie * Update var/spack/repos/builtin/packages/py-dictdiffer/package.py add correct setuptools dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-19py-pytest-arraydiff: new recipie (#21152)Andrew-Dunning-NNL1-0/+21
2021-01-19py-phonenumbers: new recipie (#21153)Andrew-Dunning-NNL1-0/+22
2021-01-19py-pygtrie: new recipie (#21154)Andrew-Dunning-NNL1-0/+17
2021-01-19amrex: remove build_type variant (#20938)Erik Schnetter1-3/+0
This variant is already provided by CMakePackage.
2021-01-19esmf: Add versions 8.0.0 and 8.0.1 (#21147)William Downs1-2/+7
2021-01-19Always set cmake args because defaults change across versions (#21146)Harmen Stoppels1-13/+10
2021-01-19cpmd: new package (#21138)ketsubouchi4-0/+1480
2021-01-19sortmerna: Fix for aarch64 (#21126)Tomoyasu Nojiri2-2/+27
2021-01-19gromacs: add v2020.5 (#21144)yellowhat1-0/+1
2021-01-19libyogrt: add lsf scheduler support, create yogrt.conf file (#19960)Robert Brunner1-4/+35
Tell the libyogrt installer to create a yogrt.conf file, specifying whatever scheduler was specified in the scheduler=XXX parameter.
2021-01-19libidn2:use http for download (#21001)Adam J. Stewart3-2/+5
This is needed since libidn is used to bootstrap curl
2021-01-19NEURON: add v7.8.2, move to CMake and remove all old versions (#20582)Pramod Kumbhar2-168/+245
* Update NEURON simulator package - update recipe to support autoconf as well as cmake - new versions >=7.8 support cmake - remove old variants - added patch for latest bug fix release 7.8.2 Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bbpv1.epfl.ch> Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bb-c02vf1h0hv2r.epfl.ch>
2021-01-19lcio, sio: add sio dependency, update versions and expose zlib version for ↵Thomas Madlener2-0/+24
sio (#20839)
2021-01-19r-grbase: added v1.8-6.7 (#21033)Glenn Johnson1-3/+21
2021-01-19specfem3d-globe: add new package (#20830)Tomoki, Karatsu2-0/+74
2021-01-19universal-ctags: added link dependency on libiconv (#21141)h-denpo1-0/+1
2021-01-19py-numexpr: added v2.7.2 (#21142)darmac1-0/+1
2021-01-18NAMD: FIX build +cuda and mpi ~smp (#20778)yellowhat1-2/+2
* NAMD: FIX build +cuda Hi, If I try to compile NAMD with CUDA support, it fails because cannot file the file "{self.arch}.cuda" because it is undet the "arch" folder. * NAMD: FIX mpi ~smp Fix `spack install namd ^charmpp backend=mpi ~smp`
2021-01-18Update versions of Wonton and Tangram packages (#20813)Rao Garimella2-3/+4
2021-01-18siesta: fix build with gfortran (#20840)Michael Kuron1-0/+2
Avoid Error: Line truncated at (1) [-Werror=line-truncation]
2021-01-18ssht: New version 1.3.4 (#20880)Erik Schnetter1-26/+9
* ssht: New version 1.3.4 ssht changed configuration mechanism from "home-grown" to "cmake. The previously current version 1.2b1 (a beta release) is thus unfortunately not available any more. * ssht: Don't set build type Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-18ParaView: add new ParaView-5.9.0-RC4 release (#21132)Vicente Bolea1-2/+2
* ParaView: add new ParaView-5.9.0-RC4 release Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com> * ParaView: add official maintainer @vicentebolea Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2021-01-18salmon-tddft: add eigenexa variant (#21140)Toyohisa Kameyama1-0/+5
2021-01-18Make sure sio library is properly propagated (#20940)Thomas Madlener1-1/+1
2021-01-18ceres-solver: add v2.0.0 (#21005)darmac1-0/+1
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