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* Fix PyQt installation
* Switch dependency type
* Replace SIP dependency with resource
* Relax py-pyqt4 Qt dependency
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(#12737)
* py-gpaw: Fixing missing numpy include path, adding newer version of py-gpaw and fixing a bug with libxc.c in older py-gpaw
* py-gpaw: Fix Python and ASE version dependencies
- GPAW 19.8.1 requires Python 3.x, add dependency on python@3.5:
- GPAW releases are associated with a corresponding ASE release, add
matching ASE version dependencies.
* py-gpaw: Enable the scalapack variant by default
GPAW installation instructions say scalapack is optional but "highly
recommended". Thus enable it by default.
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* add new cutadapt release 2.5, and adjust dependencies conditional on version
* use https, not ssh, for git url
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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* update py-xopen (add 0.8.2 checksum)
* refine version specific dependencies
add py-bz2file, which needs to be created
* create py-bz2file
* Revert "refine version specific dependencies"
This reverts commit 70649da98851fefb2f936ca99a012fe6bef07b70.
* Revert "update py-xopen (add 0.8.2 checksum)"
This reverts commit 7400f44caa6e98419eb4bc3107704b91e8a2018b.
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* update py-xopen (add 0.8.2 checksum)
* refine version specific dependencies
add py-bz2file, which needs to be created
* py-bz2file needed when built with python 2.7
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* space after comma
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* add new package py-dnaio
* provide git url with https, not ssh, protocol
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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- Fix trailing whitespace missed by the bug described in #12755.
- Fix other style issues that have crept in over time (this can happen
when flake8 adds new checks with new versions)
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5.0 (#12718)
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and making Fortran an option that can be disabled. Also added
support for the POSIX I/O wrapper and OMPT for OpenMP.
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There are problems with libunwind for arm and trying to use it with mesa.
See for example:
https://github.com/grate-driver/mesa/issues/6
disabling use of libunwind for arm, allows the package to be built
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
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Apply configure options to skip manpage generation
and test builds for both wide and non-wide builts.
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This way luarocks does not attempt to pull stuff from the internet.
Fix #3909
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- Use of symbol testing macro requires explicit include()
- CMake policies are not version-portable and the support has to queried
based on CMake version
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Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
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Adding a UPC++ spack package pointing to the default 2019.3.2 UPC++
version, and allowing to build UPC++ with the experimental CUDA variant.
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* openspeedshop: fixed build on arm.
* remove patch comment.
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* libpeas@1.22.0: new package
* libpeas: note more build dependencies
Build and link dependencies were obtained through a combination of
examining the `config.log` file from `configure` and looking at the
pkg-config files of `libpeas`.
* libpeas: add search path for GIR/typelib files
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* Use spec.architecture.target insted of platform.
* remove default in simd variant value.
simd variant change to archtecture independent values.
* Add check simd values.
* rewrite check simd values.
* * flake8
* change aarch64 to arm (neon support only 32 bit arm.)
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* corrected catalyst package for aarch64 targets
* corrected syntax
* corrected undefined variable
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* textparser: new package
* textparser: use 'parallel = False'
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Found while building mariadb in a minimal build environment.
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* py-ase: New version 3.18
Add ASE version 3.18. ASE 3.18 has dropped support for python 2.x,
hence add a dependency on python@3.5: for it.
* Add more ASE dependencies
Address review comments, add dependencies on py-scipy, py-matplotlib,
py-flask, and also add type=('build', 'run') dependency specifiers.
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* Add gams recipe
* Break down lines to pass lint
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While debugging this package on our Cray machine, tmux was throwing an
error involving the ncurses headers. Tmux would look for headers in
system locations rather than where spack installed ncurses. Tested only
on a Cray.
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* Add tecplot recipe
* break down description to pass lint
* fix format to match python 2.6 requiremnets
* importing os
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* fixed problem when requesting ~signals for boost >= 1.69
* added checks for all libs in with_libs
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* new package: liblas
* explicitly disable build options
* fix indentation
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This required dependency was missing
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* new package: protobuf-c
* Update var/spack/repos/builtin/packages/protobuf-c/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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* boost:Change the method for analysis version when using Fujitsu compiler.
* Change version to apply patch for Fujitsu.
* fix typo
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* pmlib: new package
* pmlib: fix options and add patch
* pmlib: fix the patch file
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* ccs-qcd: new package
* ccs-qcd: fix variant and replacement string
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- add tests for `spack extensions`
- refactor `test_activations` test to use real extensions.
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* Add fpocket
* fix recipe
break down the description to pass lint
* update license
* make changes as per maintainer's review
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* Install the newest version of ncbi-rmblastn
Version ncbi-rmblastn 2.2.28 coonfiguration fails for gcc compiler on ubuntu 16.04 due to some compatibility issues that requires manual intervention to keep the installation going. However you still stumble upon other issues while compiling it.
Using Intel compiler passes the configuration step but fails for the compilation process as well.
Here I'm using the latest version and patch, and the recommended configuration option as mention in http://www.repeatmasker.org/RMBlast.html
* uploading ncbi-blast patch
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