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2018-04-17r-genomicranges: package update (#7782)Matteo Guglielmi1-5/+8
* r-genomicranges: package update * r-genomicranges: dependencies fix
2018-04-17Package/geopm (#7560)Matthias Maiterth3-0/+181
* geopm: Added initial files for package geopm and py-natsort dependency * geopm: Updated variants for hwloc and mpi defaults * geopm: Cleaned up unwanted hyphenation in description. * geopm: updates according to change request. * geopm: Updated minor change requests. Clarification for ruby-ronn dependency included as a TODO. This requires changes in the current configure and build process which will be changed in a future version. * geopm: changed to AutotoolsPackage and fixed hwloc The changes for hwloc required to add a specific version bc of a conflicting version of openmpi's hwloc dependency being below 1.99. This works but updates to this package should check if this restriction is still required. (Thus TODO added) * geopm: Added link dependencies (thanks for pointing this out). Also removed empty line below class definition. * geopm: Fixed depends_on according to package guide. Removed wrong type 'run' and removed types for numactl, mpi and hwloc to use default build & link type. * geopm: Fixed and updated +doc dependencies new pacakge ruby-ronn (package specified as in ruby-narray package) Updated second +doc dependency doxygen. * geopm: Changed args for Autotools specific feature. Added enable_or_disable and with_or_without instead of if cascade. Added overhead variant. Also added missing dependency (default: build&link) for json-c).
2018-04-17glvis@3.3: new package (#7166)Geoffrey Oxberry4-0/+163
* glvis@3.3: new package * mesa-glu: now provides 'glu' (GL Utility library) * openglu: add package, provides glu * [GLVis] Use MakefilePackage as base. Add 'develop' version. Small tweaks in the makefile arguments. * [GLVis] Locate the X11, GL and GLU libraries within their respective prefixes. Set the C compiler in the makefile arguments. * [GLVis] Fix a bug: the same variable was used for two different things. * [libx11] Add the libs property * [OpenGL] Add the libs property * [OpenGLU] Add the libs property * [GLVis] Use the libs properties of libx11, opengl, and openglu
2018-04-17r-biocgenerics: package update (#7778)Matteo Guglielmi1-1/+2
2018-04-17r-genomeinfodb: package update (#7781)Matteo Guglielmi1-1/+2
2018-04-17r-htmltable: package update (#7767)Matteo Guglielmi1-3/+5
* r-htmltable: package update * r-htmltable: dependency fix * r-htmltable: dependency fix #2 * r-htmltable: dependency fix #3
2018-04-16ospac: fix compiler usage and install (#7776)Christoph Junghans1-1/+10
2018-04-16miniasm: new package (#7772)Yifan Zhu1-0/+39
2018-04-16fermikit: new package (#7775)Yifan Zhu1-0/+39
2018-04-16r-limma: package update (#7763)Matteo Guglielmi1-1/+2
* r-limma: package update * r-limma: dependency fix
2018-04-16Add libcint version 3.0.11 (#7764)Michael F. Herbst1-0/+1
2018-04-16r-hmisc: package update (#7766)Matteo Guglielmi1-1/+2
2018-04-16r-data-table: package update (#7768)Matteo Guglielmi1-0/+1
2018-04-16r-matrix: package update (#7769)Matteo Guglielmi1-1/+2
2018-04-16r-deseq2: package update (#7770)Matteo Guglielmi1-1/+2
2018-04-16add version 2.0.9 to py-slurm-pipeline (#7771)healther1-0/+1
Change-Id: I6b597076b0740d65b8aeaebf95f459745b1b1503
2018-04-14votca-moo: removal (#7762)Christoph Junghans3-45/+0
votca-moo is now part of votca-ctp (see votca/ctp#93)
2018-04-14eospac: initial commit (#7761)Christoph Junghans1-0/+45
* eospac: initial commit * eospac: add stable version
2018-04-13perl-moose: Add versions 2.2007,2.2009,2.2010 (#7758)Eric1-0/+3
2018-04-13perl-devel-overloadinfo: Add version 0.005 (#7754)Eric1-0/+1
2018-04-13prank: Add version 170427 (#7755)Eric1-0/+1
2018-04-13tcl: Add version 8.6.8 (#7756)Eric1-0/+1
2018-04-13tk: Add version 8.6.8 (#7757)Eric1-0/+1
2018-04-13flux: changed default value for doc variant to False (#7749)Massimiliano Culpo1-1/+1
fixes #2095
2018-04-13libfabric: added v1.6.0 and v1.5.3 (#7742)Raghu Raja1-1/+3
2018-04-13Fix www.example.com homepages (#7744)Adam J. Stewart6-6/+6
2018-04-12py-illumina-utils: Create new package (#7745)Eric1-0/+43
* py-illumina-utils: Create new package * fix dependency types
2018-04-12 perl-contextual-return: Create new package (#7741)Eric1-0/+36
* perl-contextual-return: Create new package * perl-contextual-return: Fix homepage url
2018-04-12New package r-tmixclust (#7658)Yifan Zhu2-1/+50
* r-tmixclust: new package * r-cluster: hash changed * r-cluster: removed 2.0.6 and added the latest 2.0.7-1
2018-04-12UCX: update for release 1.3.0 (#7740)Howard Pritchard1-1/+2
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-04-12perl-perlio-utf8-strict: Create new package (#7738)Eric1-0/+34
2018-04-12supernova: new package (#7719)Yifan Zhu1-0/+65
* runing a test * supernova: new package * removed with working_dir line
2018-04-12perl-text-simpletable: Create new package (#7739)Eric1-0/+34
2018-04-12New package r-spem (#7657)Yifan Zhu3-0/+114
* r-truncnorm: new package added * r-solnp: new package added * r-spem: new package added * r-truncnorm: removed dependency r-testthat
2018-04-12perl-math-matrixreal: Create new package (#7737)Eric1-0/+37
2018-04-12fix dependencies for matplotlib@2.2.2 (#7735)healther2-0/+37
2018-04-12perl-want: Create new package (#7734)Eric1-0/+34
2018-04-12glu: new virtual package; openglu: new package (#7162)Geoffrey Oxberry2-0/+88
* mesa-glu: now provides 'glu' (GL Utility library) * openglu: add package, provides glu * openglu: add custom fetcher, remove nonsense url Change openglu package to look like the opengl package in GitHub PR * [OpenGLU] Fix a typo
2018-04-12opengl: make error throw on install, not fetch (#7063)Geoffrey Oxberry1-3/+35
* opengl: make error throw on install, not fetch * opengl: add configuration advice for darwin * opengl: add more versions of GL/OpenGL * opengl: improve documentation in comments * [OpenGL] Fix formatting
2018-04-11add package py-gdbgui (#7715)healther1-0/+43
* add package py-gdbgui Change-Id: I553e1e4c4f6385348190817199e05b25522b57b4 * fix alignment * add setuptool runtimedependency * add gdb run dependency
2018-04-11Add package py-slurm-pipeline (#7681)healther1-0/+41
* add package py-slurm-pipeline Change-Id: Iade405a7e96f04e476cea76e460cac2ebdf21f95 * add missing py-six dependency Change-Id: I382fa4139880c1a61af3f314c74ed6e7c2e88c5b * Update package.py * Update package.py * Update package.py * fix flake8
2018-04-11Add ANTs package (#7717)Simon Flood1-0/+48
* Add ants package Add a package for ANTs (version 2.2.0) * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-11add package py-python-socketio (#7721)healther1-0/+43
* add package py-python-socketio * fix indention * add description to eventlet variant * fix dependencies Change-Id: I425ae165dfcce30df6cbbd671cd6ef1bef5078dc * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-10py-cnvkit: add new package (#7688)peetsv1-0/+46
* py-cnvkit: add new package * updating dependencies * correcting flake8 error * adding py-setuptools dependency
2018-04-10add package py-gevent (#7712)healther1-0/+40
* add package py-gevent Change-Id: I49722e02a961f20b9177ae8575b78b42bf6c01c9 * fix alignment * add cffi dependency
2018-04-10add package py-eventlet (#7722)healther1-0/+37
2018-04-10add package py-greenlet (#7720)healther1-0/+33
* add package py-greenlet * remove optional setuptools dependency
2018-04-10add package py-python-engineio (#7723)healther1-0/+39
* add package py-python-engineio * flake8 fix
2018-04-10lammps: add v20180316 (#7725)Christoph Junghans2-2/+5
* lammps: add v20180316 * add latte@1.1.1 and make lammps use it
2018-04-10hwloc: add v 2.0.1 (#7724)Daniel Topa1-1/+2
Signed-off-by: Dan Topa <dantopa@lanl.gov>
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