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2022-08-17rct: update packages (RE, RG, RP, RS, RU) with new versions (#32216)Mikhail Titov5-5/+20
2022-08-17Add HDF5 version 1.13.2. (#32202)Larry Knox1-2/+1
* Add HDF5 version 1.13.2. Remove HDF5 versions 1.13.0 and 1.13.1. * Correct formatting.
2022-08-17Add riscv-gnu-toolchain package. (#32047)wanlinwang1-0/+66
Create a package for riscv-gnu-toolchain, a cross-compilation tool.
2022-08-17clingo: fix bootstrapping on M1/monterey with command line toolsTodd Gamblin1-1/+6
The Python that comes with XCode command line tools is a bit weird. This fixes two issues that were preventing it from bootstrapping: - [x] CommandLineTools python does not come with a `python-config` executable. If you don't have one of these, CMake's FindPython will, for some reason, assume that you want Python 2, so you need to set `CLINGO_PYTHON_VERSION` to ensure that clingo tells `find_package(Python <VERSION>)` the right thing. - [x] We weren't setting `PYTHONHOME` correctly in Python's `package.py`. We were setting it to the `prefix` from Python `sysconfig`, but `prefix` tells you where the executable lives. CommandLineTools python reports its prefix as /Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8 but that doesn't exist. It looks like Apple builds the full python and just copies pieces of it into command line tools. PYTHONHOME is supposed to tell you where the default python library location is. So you have to look at the `base`, which `sysconfig` reports as /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8 On most systems this is probably the same as `prefix`, but not with CommandLineTools, which has its system library in a different place. The second change here was cherry-picked to 0d981a012d before merging and doesn't show up here. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-17python: simplify `libs()` and `headers()` methods in `python/package.py`Adam J. Stewart1-28/+46
- [x] Rework `headers` to search a sequence of directories and to display all searched locations on error, as opposed to handling each directory with a variable - [x] Make `headers` and `libs` do the same type of search and raise the same sort of errors. Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-08-17New package: py-bitshuffle (#31876)Jen Herting1-0/+26
* [py-bitshuffle] New package * [py-bitshuffle] compiling against spack hdf5 * [py-bitshuffle] flake8 * [py-bitshuffle] update import ine * [@spackbot] updating style on behalf of qwertos Co-authored-by: James A Zilberman <jazrc@rit.edu> Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-17ncbi-toolkit: adding new version (#32098)snehring1-9/+8
2022-08-17Add omnitrace version 1.4.0 (#32160)Jonathan R. Madsen1-5/+9
* Add version 1.4.0 - override build variant with explicit variant instead of __init__ workaround * Update package.py
2022-08-17fasta-36.3.8h_2020-05-04 (#32180)Mike Renfro1-0/+5
* Adding 36.3.8h_2020-05-04 * [@spackbot] updating style on behalf of mikerenfro Co-authored-by: mikerenfro <mikerenfro@users.noreply.github.com>
2022-08-17rclone: add v1.59.1 (#32011)Erik Schnetter1-0/+1
2022-08-17acts: new versions 19.7.0, 20.0.0 (#32177)Wouter Deconinck1-2/+4
2022-08-17amr-wind: remove propagation of shared and openmp variant to dependencies. ↵Jon Rood1-5/+1
(#32182)
2022-08-17kokkos: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD (#31841)eugeneswalker1-1/+1
* kokkos@develop: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD * use CMAKE_CXX_STANDARD regardless of kokkos version
2022-08-17lerc: add libs property (#31684)Adam J. Stewart1-0/+4
2022-08-17mxnet: prefer stable release (#31821)Adam J. Stewart1-1/+5
2022-08-17amrex: add v22.08 (#31844)Weiqun Zhang1-1/+2
2022-08-17arm-forge: add v22.0.4. (#31835)RichardABunt1-0/+9
2022-08-16kokkos: fix conflict for deprecated `sycl` namespaceTodd Gamblin1-1/+2
We're seeing errors pop up with older versions of Kokkos and newer versions of `oneapi`, specifically: error: no member named 'ONEAPI' in namespace 'sycl' This hapens because `sycl::ONEAPI` is `sycl::ext::oneapi` since oneapi `2022.0.0`. `kokkos@3.6:` uses the new namespace. A conflict was present for this, but it was too specific -- both to `dpcpp` and to the `2022.0.0` version. - [x] Expand version ranges in `kokkos` conflict - [x] Add conflict for `oneapi` in addition to `dpcpp`
2022-08-16Add variant to install jellyfish in krakenuniq. (#32174)dunatotatos1-1/+7
2022-08-16python: use base instead of prefix in `python/package.py`Todd Gamblin1-1/+1
2022-08-16Python: remove ensurepip variantAdam J. Stewart1-18/+1
2022-08-16celeritas: update checksum for git describe difference (#32000)Seth R. Johnson1-2/+2
* celeritas: update checksum for git describe difference Using `$Format:%h$` and the export-subst gitattribute property mean that the release checksum can change post release... ``` $ diff -ru spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/ spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/ diff -ru spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/spack-src/cmake/CgvFindVersion.cmake spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/spack-src/cmake/CgvFindVersion.cmake --- spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/spack-src/cmake/CgvFindVersion.cmake 2022-07-31 19:45:03.000000000 -0400 +++ spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/spack-src/cmake/CgvFindVersion.cmake 2022-07-31 19:45:03.000000000 -0400 @@ -75,7 +75,7 @@ # Get a possible Git version generated using git-archive (see the # .gitattributes file) - set(_ARCHIVE_TAG "HEAD -> master, tag: v0.1.0") + set(_ARCHIVE_TAG "tag: v0.1.0") set(_ARCHIVE_HASH "04fe945d9") set(_TAG_REGEX "v([0-9.]+)(-dev[0-9.]+)?") Binary files spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/v0.1.0.tar.gz and spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/v0.1.0.tar.gz differ ``` * celeritas: Use exported and re-uploaded tar.gz for reproducibility
2022-08-16podio, edm4hep: start to deprecate old versions (#32143)Thomas Madlener2-17/+85
2022-08-16direnv: add v2.32.1 (#32094)Alberto Invernizzi1-0/+1
2022-08-15nlohmann-json: add v3.11.2 and make 'multiple_headers' the default (#31865)Florian Albrechtskirchinger1-1/+6
* nlohmann-json: add v3.11.2 * nlohmann-json: variant multiple_headers should be the default
2022-08-15llvm: fix ncurses/terminfo builds (#32028)Andrew W Elble1-1/+6
* llvm: fix ncurses/terminfo builds * use suggestion * formatting
2022-08-15tophat: fixing build issue with newer automakes (#32082)snehring1-0/+4
2022-08-15netpbm: new super stable version 10.73.40 (#32087)Olivier Cessenat1-0/+1
2022-08-15MFEM: Add an exceptions variant. (#32096)Eric Brugger1-0/+2
2022-08-15bridger: adding ncurses dep (#32103)snehring1-0/+1
2022-08-15quantum-espresso: adding some missing build deps (#32109)snehring1-0/+2
2022-08-15fix oce build failure due to change of intel-tbb default version (#32101)Satish Balay1-0/+2
In file included from /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.cxx:17: /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::ForEach(InputIterator, InputIterator, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:223:18: error: 'captured_exception' in namespace 'tbb' does not name a type 223 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:225:38: error: 'anException' was not declared in this scope 225 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::For(Standard_Integer, Standard_Integer, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:272:18: error: 'captured_exception' in namespace 'tbb' does not name a type 272 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:274:38: error: 'anException' was not declared in this scope 274 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~
2022-08-15unifyfs %oneapi: add CFLAGS=-Wno-unused-function to build environment (#32107)eugeneswalker1-0/+2
2022-08-15VTK-h: Patch VTK-h to build +shared+cuda (#32104)kwryankrattiger1-0/+2
2022-08-15swig: new version 4.1.dev1-fortran (#32135)Seth R. Johnson1-1/+6
2022-08-15root: set CLING_STANDARD_PCH as in thisroot.sh (#32095)Valentin Volkl1-0/+3
* root: set CLING_STANDARD_PCH as in thisroot.sh * root: also set CPPYY_API_PATH
2022-08-15curl: --with-pkg=prefix instead of --with-pkg (#31816)Harmen Stoppels1-13/+5
2022-08-15gaudi: new version 36.7 (#32116)Wouter Deconinck1-0/+1
Small bugfix release, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r6...v36r7. No changes to recipe needed.
2022-08-15py-numpy: add v1.23.2 (#32139)Adam J. Stewart1-0/+1
2022-08-14flex %oneapi: add -Wno-implicit-function-declaration (#32073)eugeneswalker1-0/+8
2022-08-14arpack-ng %oneapi: add -Wno-implicit-function-declaration (#32080)eugeneswalker1-0/+8
2022-08-14mpifileutils %oneapi: add -Wno-implicit-function-declaration (#32067)eugeneswalker1-0/+8
2022-08-14openblas@0.3.20 %openblas: -Wno-implicit-function-declaration (#32065)eugeneswalker1-0/+8
2022-08-14hdf5 flag_handler for icx: add -Wno-implicit-function-declaration (#32066)eugeneswalker1-2/+2
2022-08-14superlu-dist %oneapi: add -Wno-implicit-function-declaration (#32081)eugeneswalker1-0/+2
2022-08-14root: fix setup_dependent_build_environment regression (#32115)Wouter Deconinck1-1/+1
`setup_dependent_build_environment(self, env, dependent_spec)` does not have a variable `spec`. This causes several issues right now: ```console ==> Installing gaudi-36.6-cjjrpjwpcqrtojyrdqml3jpzkbn55hpb ==> No binary for gaudi-36.6-cjjrpjwpcqrtojyrdqml3jpzkbn55hpb found: installing from source ==> Error: NameError: name 'spec' is not defined /home/wdconinc/git/spack/var/spack/repos/builtin/packages/root/package.py:614, in setup_dependent_build_environment: 611 env.prepend_path("ROOT_INCLUDE_PATH", dependent_spec.prefix.include) 612 if "+rpath" not in self.spec: 613 env.prepend_path("LD_LIBRARY_PATH", self.prefix.lib.root) >> 614 if "platform=darwin" in spec: 615 # Newer deployment targets cause fatal errors in rootcling 616 env.unset("MACOSX_DEPLOYMENT_TARGET") ```
2022-08-13Add new dependencies for rocm variant for py-torch recipe (#32100)renjithravindrankannath1-1/+3
* Cmake module path updated for ROCm 5.2 * nccl is already set below for PyTorch 1.6+ * Threadpool is set below for PyTorch 1.6+
2022-08-12boost@1.76:1.79 %oneapi: patch according to Intel guide for building Boost ↵eugeneswalker2-1/+1
(#32097)
2022-08-12do not require docs (py-docutils) if not +docs (#32099)Vanessasaurus1-2/+2
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-08-12Use llvm13-thread.patch for all compilers when building llvm (#31661)Mikael Simberg2-1/+3
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-09-06 03:16:17 +0000